Factsheet for GSMUA_Achr10P24470_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P04340_001	Banana	cytosol	69.94	73.08
GSMUA_Achr7P17730_001	Banana	cytosol, endoplasmic reticulum, plastid	52.15	63.91
VIT_12s0055g00930.t01	Wine grape	plastid	61.96	60.48
TraesCS1B01G292800.1	Wheat	cytosol	63.8	55.91
TraesCS1A01G283600.1	Wheat	cytosol	63.19	55.38
TraesCS1D01G282700.1	Wheat	mitochondrion	62.58	54.84
HORVU1Hr1G072500.1	Barley	mitochondrion	63.8	54.17
Os08t0405700-01	Rice	mitochondrion	64.42	51.22
KRH10507	Soybean	plastid	52.76	50.29
PGSC0003DMT400032793	Potato	plastid	51.53	50.0
KRH43920	Soybean	cytosol	49.69	48.5
KRH58299	Soybean	mitochondrion	49.08	48.19
KXG25122	Sorghum	mitochondrion	61.96	47.87
Solyc01g105000.2.1	Tomato	mitochondrion, plastid	52.15	47.75
KRH42188	Soybean	cytosol, plastid	49.08	47.62
Zm00001d050277_P001	Maize	mitochondrion	46.01	39.47
GSMUA_Achr1P14500_001	Banana	cytosol	32.52	39.26
GSMUA_Achr4P30560_001	Banana	plastid	39.88	33.68
GSMUA_Achr10P...	Banana	cytosol	7.36	33.33
GSMUA_Achr8P26110_001	Banana	cytosol	31.9	33.12
GSMUA_Achr10P...	Banana	cytosol, plastid	34.36	31.82
GSMUA_Achr2P16130_001	Banana	mitochondrion, plastid	40.49	30.84
GSMUA_Achr7P15330_001	Banana	plastid	39.88	30.52
GSMUA_Achr6P07500_001	Banana	cytosol, plastid	20.25	29.46
GSMUA_Achr6P34370_001	Banana	plastid	39.88	29.28
GSMUA_Achr9P03120_001	Banana	plastid	39.26	28.83
GSMUA_Achr6P17300_001	Banana	cytosol	19.02	28.44
GSMUA_Achr7P10400_001	Banana	plastid	35.58	27.36

Protein Annotations

EnsemblPlants:GSMUA_Achr10P24470_001	EnsemblPlants:GSMUA_Achr10T24470_001	EnsemblPlantsGene:GSMUA_Achr10G24470_001	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF80	PFAM:PF00403	PFscan:PS50846	SEG:seg
SUPFAM:SSF55008	UniParc:UPI000295E38C	UniProt:M0RL22	MapMan:35.1	:	:

Description

heavy metal-associated domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G24470_001]

Coordinates

chr10:+:28914308..28915422

Molecular Weight (calculated)

18271.4 Da

IEP (calculated)

11.032

GRAVY (calculated)

-0.345

Length

163 amino acids

Sequence
(BLAST)

001: MKANGFLCRS HIDAVCVPGD PRSMIRPRRP DRTLVEHSRL VDLKYSRLFD SRRFHSGDRS RAVTLPMVTK KQRDPPRPAK TSTSSVPSLP PPSDHVFQVV
101: VMRVSIHCQG CAGKVRKHIS KMEGVTSFSI DLESKRVIVM GHVSPVGVLE SLSKVKKAEF WPC

Best Arabidopsis Sequence Match ( AT2G28660.1 )
(BLAST)

001: MRFSDIFCSS PASTAVRHST LHHDGNVTGG RRSFQSHLRS QNPSKKKDKT VPCFSSEMPL IPIPRHLSCR NSFESPSGFR PKIASARGSD VQIRRKSSAD
101: VSDLRRSRSS LLSSSSRYLL KDHKSLKGDD KDLWLSSDRS KDLILYRDRN VTSSASSSSS SSSSSFSSSV TNVSSPAPST DDQVVVLRVS IHCKGCEGKV
201: RKHISKMEGV TSYTIDLATK KVTVVGKITP VGLVESISKV KFAQLWPSSS SPPFPHIPNY SLLKS

Arabidopsis Description

At2g28660 [Source:UniProtKB/TrEMBL;Acc:Q7XZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.