Factsheet for GSMUA_Achr5P04340_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	73.08	69.94
VIT_12s0055g00930.t01	Wine grape	plastid	60.9	56.89
GSMUA_Achr7P17730_001	Banana	cytosol, endoplasmic reticulum, plastid	45.51	53.38
TraesCS1B01G292800.1	Wheat	cytosol	58.33	48.92
TraesCS1A01G283600.1	Wheat	cytosol	58.33	48.92
TraesCS1D01G282700.1	Wheat	mitochondrion	57.69	48.39
PGSC0003DMT400032793	Potato	plastid	51.28	47.62
HORVU1Hr1G072500.1	Barley	mitochondrion	58.33	47.4
KRH42188	Soybean	cytosol, plastid	49.36	45.83
Os08t0405700-01	Rice	mitochondrion	59.62	45.37
KRH58299	Soybean	mitochondrion	48.08	45.18
KRH10507	Soybean	plastid	48.72	44.44
Solyc01g105000.2.1	Tomato	mitochondrion, plastid	50.64	44.38
KXG25122	Sorghum	mitochondrion	58.33	43.13
KRH43920	Soybean	cytosol	45.51	42.52
Zm00001d050277_P001	Maize	mitochondrion	44.87	36.84
GSMUA_Achr1P14500_001	Banana	cytosol	30.13	34.81
GSMUA_Achr10P...	Banana	cytosol	7.69	33.33
GSMUA_Achr4P30560_001	Banana	plastid	39.1	31.61
GSMUA_Achr10P...	Banana	cytosol, plastid	35.26	31.25
GSMUA_Achr8P26110_001	Banana	cytosol	30.13	29.94
GSMUA_Achr2P16130_001	Banana	mitochondrion, plastid	40.38	29.44
GSMUA_Achr6P17300_001	Banana	cytosol	20.51	29.36
GSMUA_Achr7P15330_001	Banana	plastid	38.46	28.17
GSMUA_Achr6P07500_001	Banana	cytosol, plastid	19.87	27.68
GSMUA_Achr6P34370_001	Banana	plastid	38.46	27.03
GSMUA_Achr9P03120_001	Banana	plastid	37.82	26.58
GSMUA_Achr7P10400_001	Banana	plastid	34.62	25.47

Protein Annotations

EnsemblPlants:GSMUA_Achr5P04340_001	EnsemblPlants:GSMUA_Achr5T04340_001	EnsemblPlantsGene:GSMUA_Achr5G04340_001	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF80	PFAM:PF00403	PFscan:PS50846	SUPFAM:SSF55008
UniParc:UPI0002960FC2	UniProt:M0SVL3	MapMan:35.1	:	:	:

Description

Putative heavy metal-associated domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G04340_001]

Coordinates

chr5:-:3138930..3139835

Molecular Weight (calculated)

17325.4 Da

IEP (calculated)

10.733

GRAVY (calculated)

-0.216

Length

156 amino acids

Sequence
(BLAST)

001: MKANGLLCRS RSATAVCVPD DPRLMIVPRQ LDRTLVDVKC SRLGDPRRFS SGDGRSVTLP MVMKKERVPR KPSSGSNLIS SFPPSNHHVF QVVVMRVSLH
101: CQACAGKVRK HISKMEGVTS FSIELESKRV TVMGYVSPEG VLEKISKVKK AEFWPC

Best Arabidopsis Sequence Match ( AT5G02600.1 )
(BLAST)

001: MLCASQASTT TLCSTMDQTS QPSSSSSATI RLGGRAIDRH NPIIRDGRRL TPPPSPNLNP SSSSSSTYHT PLMTRLGLES SEQKRLAKRK SKKGDSDVGK
101: SPVSCFSSDT PQGSSRYLLS NPVFFDGFVD SDPIPIPIDE PEITKADDLN NFHEDRLIIN ASKYLSTSAS FLEKKQPDFF EGFLDYEPVL SPDNPFSEPT
201: KASPTASLSS LEDKDVSSPD FKFSPPPPPP PSPPQSSPPS PPEKNSSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSY NIDFAAKKVT VTGDVTPLTV
301: LASISKVKNA QFWPEIIQK

Arabidopsis Description

NAKR1Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDS4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.