Factsheet for VIT_12s0055g00930.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	60.48	61.96
GSMUA_Achr5P04340_001	Banana	cytosol	56.89	60.9
KRH10507	Soybean	plastid	55.69	54.39
KRH58299	Soybean	mitochondrion	52.69	53.01
KRH43920	Soybean	cytosol	52.69	52.69
GSMUA_Achr7P17730_001	Banana	cytosol, endoplasmic reticulum, plastid	41.92	52.63
KRH42188	Soybean	cytosol, plastid	52.69	52.38
PGSC0003DMT400032793	Potato	plastid	50.3	50.0
TraesCS1A01G283600.1	Wheat	cytosol	55.09	49.46
TraesCS1B01G292800.1	Wheat	cytosol	53.89	48.39
Solyc01g105000.2.1	Tomato	mitochondrion, plastid	50.9	47.75
HORVU1Hr1G072500.1	Barley	mitochondrion	54.49	47.4
TraesCS1D01G282700.1	Wheat	mitochondrion	52.69	47.31
Os08t0405700-01	Rice	mitochondrion	56.29	45.85
KXG25122	Sorghum	mitochondrion	53.89	42.65
VIT_13s0074g00770.t01	Wine grape	cytosol	20.96	40.7
VIT_11s0016g04220.t01	Wine grape	cytosol	29.94	37.31
Zm00001d050277_P001	Maize	mitochondrion	41.32	36.32
VIT_08s0040g02700.t01	Wine grape	cytosol, plastid	38.32	23.7
VIT_06s0004g04030.t01	Wine grape	plastid	32.93	23.4

Protein Annotations

EntrezGene:100243595	wikigene:100243595	Gene3D:3.30.70.100	MapMan:35.1	ProteinID:CCB46163	ProteinID:CCB46163.1
UniProt:F6H1N1	EMBL:FN595228	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0030001	GO:GO:0046872	GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	EntrezGene:LOC100243595	wikigene:LOC100243595	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814
PANTHER:PTHR22814:SF80	SUPFAM:SSF55008	UniParc:UPI00021083C2	ArrayExpress:VIT_12s0055g00930	EnsemblPlantsGene:VIT_12s0055g00930	EnsemblPlants:VIT_12s0055g00930.t01
RefSeq:XP_002268854	RefSeq:XP_002268854.2	:	:	:	:

Description

No Description!

Coordinates

chr12:+:14399749..14402065

Molecular Weight (calculated)

18474.9 Da

IEP (calculated)

10.917

GRAVY (calculated)

-0.117

Length

167 amino acids

Sequence
(BLAST)

001: MRGLMCHSPA ATAVCIPGDP RSVIVPRRPD RTLVDHSRLI NNAKYSRLVE SHRFTPAAKR SVLVPAMKRG HRPSAEPMPF HPPSSTPSLD HVFQVRFMII
101: CKVVVMRVSL HCQGCAGKVK KHLSKMEGVT SFSIDLETKR VTVMGHVSPS GVLESISKVK KAELWSC

Best Arabidopsis Sequence Match ( AT2G28660.1 )
(BLAST)

001: MRFSDIFCSS PASTAVRHST LHHDGNVTGG RRSFQSHLRS QNPSKKKDKT VPCFSSEMPL IPIPRHLSCR NSFESPSGFR PKIASARGSD VQIRRKSSAD
101: VSDLRRSRSS LLSSSSRYLL KDHKSLKGDD KDLWLSSDRS KDLILYRDRN VTSSASSSSS SSSSSFSSSV TNVSSPAPST DDQVVVLRVS IHCKGCEGKV
201: RKHISKMEGV TSYTIDLATK KVTVVGKITP VGLVESISKV KFAQLWPSSS SPPFPHIPNY SLLKS

Arabidopsis Description

At2g28660 [Source:UniProtKB/TrEMBL;Acc:Q7XZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.