Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
- cytosol 3
- nucleus 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g01360.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56240.1 | VIT_01s0011g01360.t01 | AT5G44790.1 | 17223078 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060399 | Potato | cytosol, plastid | 80.23 | 85.19 |
| Solyc05g055310.2.1 | Tomato | plastid | 80.23 | 85.19 |
| TraesCS7B01G247000.1 | Wheat | cytosol | 73.26 | 81.82 |
| TraesCS7D01G342900.1 | Wheat | cytosol | 73.26 | 81.82 |
| Zm00001d031132_P002 | Maize | cytosol | 79.07 | 80.95 |
| KRH34745 | Soybean | endoplasmic reticulum | 74.42 | 79.01 |
| Os08t0205400-01 | Rice | extracellular, plasma membrane | 74.42 | 79.01 |
| EES17440 | Sorghum | cytosol, plastid | 77.91 | 77.01 |
| GSMUA_Achr10P... | Banana | cytosol | 30.23 | 72.22 |
| CDX72154 | Canola | cytosol | 72.09 | 59.05 |
| CDY71670 | Canola | cytosol | 72.09 | 59.05 |
| GSMUA_Achr6P07500_001 | Banana | cytosol, plastid | 76.74 | 58.93 |
| Bra007230.1-P | Field mustard | cytosol, plastid | 72.09 | 58.49 |
| GSMUA_Achr6P17300_001 | Banana | cytosol | 72.09 | 56.88 |
| TraesCS7A01G439300.1 | Wheat | cytosol | 72.09 | 56.36 |
| TraesCS7D01G429000.1 | Wheat | cytosol | 70.93 | 55.96 |
| HORVU7Hr1G100230.1 | Barley | cytosol | 69.77 | 53.57 |
| Zm00001d016691_P001 | Maize | extracellular | 68.6 | 52.68 |
| EES06905 | Sorghum | cytosol | 68.6 | 52.21 |
| AT3G56240.1 | Thale cress | cytosol | 73.26 | 52.07 |
| KRG92037 | Soybean | cytosol | 73.26 | 51.22 |
| TraesCS7B01G338200.1 | Wheat | cytosol | 62.79 | 50.47 |
| CDX67640 | Canola | cytosol | 73.26 | 50.0 |
| Bra003234.1-P | Field mustard | cytosol, plastid | 72.09 | 48.82 |
| CDX76052 | Canola | cytosol | 70.93 | 44.2 |
| Bra014702.1-P | Field mustard | cytosol | 70.93 | 36.97 |
| TraesCS7A01G335400.1 | Wheat | cytosol | 70.93 | 36.53 |
| CDY43346 | Canola | cytosol | 70.93 | 35.88 |
| HORVU7Hr1G082540.3 | Barley | cytosol, plastid | 32.56 | 34.57 |
| CDY32007 | Canola | plastid | 70.93 | 32.97 |
| VIT_11s0016g04220.t01 | Wine grape | cytosol | 33.72 | 21.64 |
| VIT_12s0055g00930.t01 | Wine grape | plastid | 40.7 | 20.96 |
| VIT_06s0004g04030.t01 | Wine grape | plastid | 41.86 | 15.32 |
| VIT_08s0040g02700.t01 | Wine grape | cytosol, plastid | 38.37 | 12.22 |
Protein Annotations
| EntrezGene:100247137 | wikigene:100247137 | MapMan:25.5.2.3 | Gene3D:3.30.70.100 | ProteinID:CBI40250 | ProteinID:CBI40250.3 |
| UniProt:D7UBY5 | EMBL:FN596753 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 |
| GO:GO:0030001 | GO:GO:0046872 | GO:GO:0046914 | GO:GO:0046916 | InterPro:HMA_dom | InterPro:HMA_dom_sf |
| InterPro:IPR006121 | EntrezGene:LOC100247137 | wikigene:LOC100247137 | PFAM:PF00403 | PFscan:PS50846 | PANTHER:PTHR22814 |
| PANTHER:PTHR22814:SF172 | SUPFAM:SSF55008 | TIGR:TC62998 | UniParc:UPI00019847C2 | ArrayExpress:VIT_13s0074g00770 | EnsemblPlantsGene:VIT_13s0074g00770 |
| EnsemblPlants:VIT_13s0074g00770.t01 | unigene:Vvi.13080 | RefSeq:XP_002264332 | RefSeq:XP_002264332.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr13:-:9143420..9146045
Molecular Weight (calculated)
8996.0 Da
IEP (calculated)
8.213
GRAVY (calculated)
-0.049
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MAQTVVLKVG MSCEGCVGAV KRVLGKMEGV ESFDIDLKEQ KVTVKGNVQP DAVLKTVSKT GKKTSFWEAE ASAEPGAKAA ETVPVA
001: MLKDLFQAVS YQNTASLSLF QALSVVESKA MSQTVVLRVA MTCEGCVGAV KRVLGKMEGV ESFDVDIKEQ KVTVKGNVQP DAVLQTVTKT GKKTAFWEAE
101: GETAKA
101: GETAKA
Arabidopsis Description
ATX1homolog of anti-oxidant 1 [Source:TAIR;Acc:AT1G66240]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.