Factsheet for VIT_08s0040g02700.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 4
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19750	Soybean	plastid	57.04	55.8
KRH32346	Soybean	plastid	56.67	54.64
KRG95861	Soybean	plastid	57.78	53.79
KRH67578	Soybean	plastid	57.41	53.45
GSMUA_Achr4P30560_001	Banana	plastid	37.78	52.85
GSMUA_Achr9P03120_001	Banana	plastid	40.37	49.1
GSMUA_Achr2P16130_001	Banana	mitochondrion, plastid	38.52	48.6
GSMUA_Achr6P34370_001	Banana	plastid	39.26	47.75
Solyc10g085910.1.1	Tomato	nucleus	50.74	46.13
PGSC0003DMT400045359	Potato	cytosol	50.74	45.67
GSMUA_Achr7P10400_001	Banana	plastid	35.56	45.28
VIT_06s0004g04030.t01	Wine grape	plastid	39.26	45.11
GSMUA_Achr10P...	Banana	cytosol, plastid	28.89	44.32
GSMUA_Achr7P15330_001	Banana	plastid	34.44	43.66
Zm00001d012973_P001	Maize	plastid	34.07	43.6
EER90630	Sorghum	plastid	34.07	43.19
Os03t0819400-01	Rice	plastid	32.22	42.86
Zm00001d034634_P001	Maize	plastid	32.59	41.9
VIT_11s0016g04220.t01	Wine grape	cytosol	20.74	41.79
Bra017191.1-P	Field mustard	cytosol	40.37	41.13
HORVU5Hr1G112560.1	Barley	plastid	31.48	41.06
AT2G37390.1	Thale cress	cytosol	39.26	40.93
CDX93383	Canola	cytosol	40.0	40.6
Bra003142.1-P	Field mustard	cytosol, plastid	37.04	40.16
CDY67353	Canola	cytosol, plastid	37.78	40.0
CDY52751	Canola	cytosol	37.04	40.0
CDY18449	Canola	cytosol	39.63	39.93
AT3G53530.2	Thale cress	cytosol, plastid	36.67	39.92
CDY07583	Canola	cytosol	35.93	39.92
CDX91358	Canola	cytosol	40.0	39.85
TraesCS5A01G475200.1	Wheat	plastid	30.74	39.71
Bra007008.1-P	Field mustard	cytosol, plastid	37.41	39.61
CDX73547	Canola	cytosol, plastid	37.04	39.53
CDX74966	Canola	cytosol	39.63	39.34
TraesCS5B01G488200.1	Wheat	plastid	30.74	39.34
Bra005201.1-P	Field mustard	cytosol	38.89	39.03
VIT_13s0074g00770.t01	Wine grape	cytosol	12.22	38.37
VIT_12s0055g00930.t01	Wine grape	plastid	23.7	38.32
Zm00001d038419_P001	Maize	cytosol	18.89	22.47

Protein Annotations

EntrezGene:100244737	wikigene:100244737	Gene3D:3.30.70.100	MapMan:35.1	ProteinID:CBI32665	ProteinID:CBI32665.3
UniProt:D7TQE5	EMBL:FN596008	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0030001	GO:GO:0046872	GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	EntrezGene:LOC100244737	wikigene:LOC100244737	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814
PANTHER:PTHR22814:SF82	SUPFAM:SSF55008	TIGR:TC59907	TIGR:TC70581	UniParc:UPI00015CA87C	ArrayExpress:VIT_08s0040g02700
EnsemblPlantsGene:VIT_08s0040g02700	EnsemblPlants:VIT_08s0040g02700.t01	RefSeq:XP_002277868	RefSeq:XP_002277868.1	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:13725176..13727053

Molecular Weight (calculated)

28727.4 Da

IEP (calculated)

10.370

GRAVY (calculated)

-0.340

Length

270 amino acids

Sequence
(BLAST)

001: MKGIDIFCAS QASTAICVSM EPGSSSSSAI DQGGRAIDRH NPIIRDARRS SVKTLTTPCS SQSPINPKPY HQLHQKNRKT TGKSNDQIKK ASAKNVDQYG
101: KSSAKPLDML RKSSAKFVDL ISPPGSSRYL LSEPPFFDVL PDFDPVLALV PVEPKKAKAV NLDDDSPVLK PSSSSGSSDS KPSSSSGSAD QVVVLRVSLH
201: CKGCEGKLRK HISRMEGVTS FNIDFAAKKV TVVGDVTPLG VLASVSKVKS AQLWTPAMAS SLPHGLARVK

Best Arabidopsis Sequence Match ( AT2G37390.2 )
(BLAST)

001: MKGRMFCASQ ASTAICSSMD HVHKSTTTDE DERNSGRAID RHNPIIKDGR RSFADDFIKL PTSAEDGEMS NKKLEIYKGR RSITGRRSTG GGGGGGAAAL
101: LKLITNDIGL ARKSFSCVAR PACDLIKTPV GSTRYLLGSD PDSITGSVDQ DPAKTVEAEA PAGEDKTLTE KKTTCGDTDQ VVVLKVSLHC RGCEGKVRKH
201: LARMQGVTSF NIDFAAKKVT VTGDITPLEI LDSISKVKNA QFWTNPTIPK PNVETQNP

Arabidopsis Description

NAKR2Protein SODIUM POTASSIUM ROOT DEFECTIVE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q58FZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.