Factsheet for PGSC0003DMT400045359

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g085910.1.1	Tomato	nucleus	95.67	96.63
VIT_08s0040g02700.t01	Wine grape	cytosol, plastid	45.67	50.74
KRH32346	Soybean	plastid	45.67	48.93
KRH19750	Soybean	plastid	44.67	48.55
KRG95861	Soybean	plastid	45.33	46.9
KRH67578	Soybean	plastid	44.33	45.86
AT2G37390.1	Thale cress	cytosol	37.0	42.86
PGSC0003DMT400040203	Potato	cytosol	36.33	41.92
Bra017191.1-P	Field mustard	cytosol	36.67	41.51
CDY18449	Canola	cytosol	37.0	41.42
CDX93383	Canola	cytosol	36.67	41.35
CDX91358	Canola	cytosol	37.33	41.33
CDX73547	Canola	cytosol, plastid	34.67	41.11
Bra003142.1-P	Field mustard	cytosol, plastid	34.0	40.96
Os03t0819400-01	Rice	plastid	27.67	40.89
CDY52751	Canola	cytosol	34.0	40.8
CDY67353	Canola	cytosol, plastid	34.67	40.78
Bra007008.1-P	Field mustard	cytosol, plastid	34.67	40.78
CDY07583	Canola	cytosol	33.0	40.74
CDX74966	Canola	cytosol	36.67	40.44
AT3G53530.2	Thale cress	cytosol, plastid	33.33	40.32
Bra005201.1-P	Field mustard	cytosol	36.0	40.15
Zm00001d034634_P001	Maize	plastid	28.0	40.0
EER90630	Sorghum	plastid	28.33	39.91
Zm00001d012973_P001	Maize	plastid	27.67	39.34
TraesCS5B01G488200.1	Wheat	plastid	27.0	38.39
TraesCS5A01G475200.1	Wheat	plastid	26.67	38.28
HORVU5Hr1G112560.1	Barley	plastid	26.0	37.68
PGSC0003DMT400060399	Potato	cytosol, plastid	9.67	35.8
PGSC0003DMT400001032	Potato	cytosol	17.0	34.23
PGSC0003DMT400032793	Potato	plastid	19.0	33.93
PGSC0003DMT400050141	Potato	cytosol, plastid	10.67	30.19
Zm00001d038419_P001	Maize	cytosol	18.0	23.79

Protein Annotations

EntrezGene:102593645	Gene3D:3.30.70.100	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810
GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
UniProt:M1BHJ6	PFAM:PF00403	EnsemblPlantsGene:PGSC0003DMG400017602	PGSC:PGSC0003DMG400017602	EnsemblPlants:PGSC0003DMT400045359	PFscan:PS50846
PANTHER:PTHR22814	PANTHER:PTHR22814:SF82	SUPFAM:SSF55008	UniParc:UPI000295A3F9	RefSeq:XP_006363690.1	SEG:seg

Description

Chloroplast-targeted copper chaperone [Source:PGSC_GENE;Acc:PGSC0003DMG400017602]

Coordinates

chr10:+:52417462..52421546

Molecular Weight (calculated)

32398.7 Da

IEP (calculated)

10.212

GRAVY (calculated)

-0.433

Length

300 amino acids

Sequence
(BLAST)

001: MKDMFCASQA ATAICLSMEE LGSSSSSSSV IQLGGGSISG SRAIDRYNPI IRDSRRTGPK SISAPCSARS PISPKAQSKS RKSTSKESKR SKGVSKKLLI
101: EKDDEKRKSS VSEGNENIFK TSSWSCKKPG EFITPPGSSR YLLSEKNILD ALSDFEPVLK LVDSSSSSSV LEDVKTETHE SCPPPSASAN QVVVLRVSLH
201: CRGCERKMRK HISRMQGVKS FNIDFAAKKV TVTGDVTPLG VLASISKVKN AQLWTPTLAS SVPTAKVNLS NSELNNDKQM VLSHEKIENV TPTTTTIQLM

Best Arabidopsis Sequence Match ( AT2G37390.2 )
(BLAST)

001: MKGRMFCASQ ASTAICSSMD HVHKSTTTDE DERNSGRAID RHNPIIKDGR RSFADDFIKL PTSAEDGEMS NKKLEIYKGR RSITGRRSTG GGGGGGAAAL
101: LKLITNDIGL ARKSFSCVAR PACDLIKTPV GSTRYLLGSD PDSITGSVDQ DPAKTVEAEA PAGEDKTLTE KKTTCGDTDQ VVVLKVSLHC RGCEGKVRKH
201: LARMQGVTSF NIDFAAKKVT VTGDITPLEI LDSISKVKNA QFWTNPTIPK PNVETQNP

Arabidopsis Description

NAKR2Protein SODIUM POTASSIUM ROOT DEFECTIVE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q58FZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.