Factsheet for Solyc10g085910.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045359	Potato	cytosol	96.63	95.67
VIT_08s0040g02700.t01	Wine grape	cytosol, plastid	46.13	50.74
KRH32346	Soybean	plastid	46.8	49.64
KRH19750	Soybean	plastid	45.79	49.28
KRG95861	Soybean	plastid	45.45	46.55
KRH67578	Soybean	plastid	44.44	45.52
AT2G37390.1	Thale cress	cytosol	36.7	42.08
Solyc11g073020.1.1	Tomato	cytosol	36.36	41.86
Os03t0819400-01	Rice	plastid	28.28	41.38
Bra017191.1-P	Field mustard	cytosol	36.7	41.13
CDX73547	Canola	cytosol, plastid	34.68	40.71
CDY18449	Canola	cytosol	36.7	40.67
CDX93383	Canola	cytosol	36.36	40.6
Bra003142.1-P	Field mustard	cytosol, plastid	34.01	40.56
Zm00001d034634_P001	Maize	plastid	28.62	40.48
CDY52751	Canola	cytosol	34.01	40.4
CDY67353	Canola	cytosol, plastid	34.68	40.39
Bra007008.1-P	Field mustard	cytosol, plastid	34.68	40.39
EER90630	Sorghum	plastid	28.96	40.38
CDY07583	Canola	cytosol	33.0	40.33
CDX91358	Canola	cytosol	36.7	40.22
AT3G53530.2	Thale cress	cytosol, plastid	33.33	39.92
Zm00001d012973_P001	Maize	plastid	28.28	39.81
CDX74966	Canola	cytosol	36.03	39.34
TraesCS5A01G475200.1	Wheat	plastid	27.61	39.23
Bra005201.1-P	Field mustard	cytosol	35.35	39.03
TraesCS5B01G488200.1	Wheat	plastid	27.61	38.86
HORVU5Hr1G112560.1	Barley	plastid	26.94	38.65
Solyc05g055310.2.1	Tomato	plastid	9.76	35.8
Solyc01g105000.2.1	Tomato	mitochondrion, plastid	19.19	32.02
Solyc11g007200.1.1	Tomato	extracellular	10.77	28.32
Zm00001d038419_P001	Maize	cytosol	18.18	23.79

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0030001	GO:GO:0046872	GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	UniProt:K4D425	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF82
SUPFAM:SSF55008	EnsemblPlantsGene:Solyc10g085910.1	EnsemblPlants:Solyc10g085910.1.1	UniParc:UPI0002769343	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:64929365..64931759

Molecular Weight (calculated)

32121.4 Da

IEP (calculated)

10.197

GRAVY (calculated)

-0.466

Length

297 amino acids

Sequence
(BLAST)

001: MKDMFCASQA ATAICLSMEE LGSSSSSSSV IQLGGGSISG SRTIDRYNPI IRDSRRTGPK SISAPCSARS PIPPKPHSKS RKSTSKESKR SKKLLIEKDD
101: EKRKSSVSEG NENIFKTSSW SCKKPGEFIT PPGSSRYLLS EKNILDALSD FEPVLKLVDS SSSSSVAEDV KTETDQSCPP PSASANQVVV LRVSLHCRGC
201: EKKMRKHISR MQGVKSFNID FAAKKVTVTG DVTPLGVLAS ISKVKNAQLW TPTLASAVPT AKVNLSNSEL KNNDKQMVLS HEKIENVTPT TTTIQLM

Best Arabidopsis Sequence Match ( AT2G37390.2 )
(BLAST)

001: MKGRMFCASQ ASTAICSSMD HVHKSTTTDE DERNSGRAID RHNPIIKDGR RSFADDFIKL PTSAEDGEMS NKKLEIYKGR RSITGRRSTG GGGGGGAAAL
101: LKLITNDIGL ARKSFSCVAR PACDLIKTPV GSTRYLLGSD PDSITGSVDQ DPAKTVEAEA PAGEDKTLTE KKTTCGDTDQ VVVLKVSLHC RGCEGKVRKH
201: LARMQGVTSF NIDFAAKKVT VTGDITPLEI LDSISKVKNA QFWTNPTIPK PNVETQNP

Arabidopsis Description

NAKR2Protein SODIUM POTASSIUM ROOT DEFECTIVE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q58FZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.