Factsheet for PGSC0003DMT400001032

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g04220.t01	Wine grape	cytosol	62.42	69.4
KRH60302	Soybean	cytosol, extracellular	55.7	62.88
KRH48431	Soybean	cytosol	55.7	61.48
GSMUA_Achr1P14500_001	Banana	cytosol	53.69	59.26
KRH41596	Soybean	cytosol	52.35	59.09
KRH39252	Soybean	cytosol	53.02	58.52
Os01t0719600-01	Rice	cytosol	51.68	54.23
AT3G24450.1	Thale cress	cytosol	50.34	53.57
HORVU3Hr1G068200.1	Barley	cytosol	51.01	53.15
Bra001948.1-P	Field mustard	cytosol	49.66	52.86
TraesCS3A01G288300.1	Wheat	cytosol	50.34	52.45
CDX94814	Canola	cytosol	48.99	52.14
TraesCS3D01G288100.1	Wheat	cytosol	49.66	51.75
TraesCS3B01G322900.1	Wheat	cytosol	49.66	51.75
EES01377	Sorghum	cytosol	51.01	51.35
KXG22404	Sorghum	extracellular	48.32	48.65
GSMUA_Achr8P26110_001	Banana	cytosol	51.01	48.41
TraesCS1B01G371000.1	Wheat	cytosol, mitochondrion	44.97	45.89
TraesCS1A01G352100.1	Wheat	mitochondrion	44.97	45.27
Zm00001d043615_P001	Maize	cytosol	47.65	45.22
Os05t0534500-01	Rice	cytosol, mitochondrion	48.32	45.0
CDY69094	Canola	cytosol	33.56	44.64
Zm00001d011731_P001	Maize	extracellular	44.3	44.59
HORVU1Hr1G080800.1	Barley	mitochondrion	44.3	43.42
PGSC0003DMT400060399	Potato	cytosol, plastid	19.46	35.8
PGSC0003DMT400050141	Potato	cytosol, plastid	18.79	26.42
PGSC0003DMT400032793	Potato	plastid	27.52	24.4
PGSC0003DMT400040203	Potato	cytosol	36.91	21.15
PGSC0003DMT400045359	Potato	cytosol	34.23	17.0

Protein Annotations

EntrezGene:102589356	Gene3D:3.30.70.100	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810
GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
UniProt:M0ZHR8	PFAM:PF00403	EnsemblPlantsGene:PGSC0003DMG400000385	PGSC:PGSC0003DMG400000385	EnsemblPlants:PGSC0003DMT400001032	PFscan:PS50846
PFscan:PS51257	PANTHER:PTHR22814	PANTHER:PTHR22814:SF101	SUPFAM:SSF55008	UniParc:UPI000295E938	RefSeq:XP_006353448.1

Description

Chloroplast-targeted copper chaperone [Source:PGSC_GENE;Acc:PGSC0003DMG400000385]

Coordinates

chr12:-:4674833..4676481

Molecular Weight (calculated)

16709.2 Da

IEP (calculated)

6.101

GRAVY (calculated)

-0.188

Length

149 amino acids

Sequence
(BLAST)

001: MRKINFGKVL DCFSTLSSSG SCFCINQVGV HDDDDDGFEK KPLMNNNSLN QDDEHELMRL KDVINVGPPT LAFQLKPKIV VLRVSIHCNG CARKVEKHIS
101: KMEGVDMYQV DLETKKVVVI GDIIPFQVLE SVSKVVKNVE LSSWNTPEC

Best Arabidopsis Sequence Match ( AT3G24450.1 )
(BLAST)

001: MGKLQKIGRV WDCLFLPTNQ CSCFCLNTLG DEEEEFEKEP LIDSSTEKSG KVMRLKDVVA ADHRQTLAFH LKPKIVELKV SMHCYGCAKK VEKHISKLDG
101: VTWYKVELES KKVVVKGNIL PVDVLESICK VKNAQLWSSP

Arabidopsis Description

Heavy metal transport/detoxification superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.