Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- golgi 2
- extracellular 2
- mitochondrion 2
- cytosol 3
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001948.1-P | Field mustard | cytosol | 92.86 | 92.86 |
| CDX94814 | Canola | cytosol | 91.43 | 91.43 |
| CDY69094 | Canola | cytosol | 66.43 | 83.04 |
| VIT_11s0016g04220.t01 | Wine grape | cytosol | 58.57 | 61.19 |
| KRH48431 | Soybean | cytosol | 58.57 | 60.74 |
| KRH60302 | Soybean | cytosol, extracellular | 57.14 | 60.61 |
| KRH39252 | Soybean | cytosol | 55.71 | 57.78 |
| KRH41596 | Soybean | cytosol | 53.57 | 56.82 |
| GSMUA_Achr1P14500_001 | Banana | cytosol | 52.14 | 54.07 |
| Os01t0719600-01 | Rice | cytosol | 54.29 | 53.52 |
| PGSC0003DMT400001032 | Potato | cytosol | 53.57 | 50.34 |
| TraesCS1B01G371000.1 | Wheat | cytosol, mitochondrion | 52.14 | 50.0 |
| EES01377 | Sorghum | cytosol | 52.86 | 50.0 |
| Zm00001d011731_P001 | Maize | extracellular | 51.43 | 48.65 |
| HORVU3Hr1G068200.1 | Barley | cytosol | 48.57 | 47.55 |
| TraesCS3B01G322900.1 | Wheat | cytosol | 48.57 | 47.55 |
| TraesCS3D01G288100.1 | Wheat | cytosol | 48.57 | 47.55 |
| TraesCS1A01G352100.1 | Wheat | mitochondrion | 50.0 | 47.3 |
| KXG22404 | Sorghum | extracellular | 50.0 | 47.3 |
| TraesCS3A01G288300.1 | Wheat | cytosol | 47.86 | 46.85 |
| Zm00001d043615_P001 | Maize | cytosol | 52.14 | 46.5 |
| Os05t0534500-01 | Rice | cytosol, mitochondrion | 52.86 | 46.25 |
| HORVU1Hr1G080800.1 | Barley | mitochondrion | 50.0 | 46.05 |
| GSMUA_Achr8P26110_001 | Banana | cytosol | 50.71 | 45.22 |
| AT1G66240.1 | Thale cress | cytosol, plastid | 17.86 | 23.58 |
| AT3G56240.1 | Thale cress | cytosol | 17.14 | 19.83 |
| AT2G28660.1 | Thale cress | plastid | 32.14 | 16.98 |
| AT2G37390.1 | Thale cress | cytosol | 30.0 | 16.22 |
| AT3G53530.2 | Thale cress | cytosol, plastid | 28.57 | 16.13 |
| AT5G02600.1 | Thale cress | plastid | 35.0 | 15.36 |
Protein Annotations
| Gene3D:3.30.70.100 | MapMan:35.2 | EntrezGene:822035 | ProteinID:AEE76899.1 | EMBL:AF370237 | ArrayExpress:AT3G24450 |
| EnsemblPlantsGene:AT3G24450 | RefSeq:AT3G24450 | TAIR:AT3G24450 | RefSeq:AT3G24450-TAIR-G | EnsemblPlants:AT3G24450.1 | TAIR:AT3G24450.1 |
| EMBL:AY062958 | ProteinID:BAB01948.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 |
| GO:GO:0030001 | GO:GO:0046872 | GO:GO:0046914 | GO:GO:0046916 | InterPro:HMA_dom | InterPro:HMA_dom_sf |
| InterPro:IPR006121 | RefSeq:NP_566747.1 | PFAM:PF00403 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50846 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF101 |
| UniProt:Q9LHF4 | SUPFAM:SSF55008 | UniParc:UPI00000AB2B7 | SEG:seg | : | : |
Description
Heavy metal transport/detoxification superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHF4]
Coordinates
chr3:-:8880012..8881779
Molecular Weight (calculated)
15864.5 Da
IEP (calculated)
8.285
GRAVY (calculated)
-0.229
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKLQKIGRV WDCLFLPTNQ CSCFCLNTLG DEEEEFEKEP LIDSSTEKSG KVMRLKDVVA ADHRQTLAFH LKPKIVELKV SMHCYGCAKK VEKHISKLDG
101: VTWYKVELES KKVVVKGNIL PVDVLESICK VKNAQLWSSP
101: VTWYKVELES KKVVVKGNIL PVDVLESICK VKNAQLWSSP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.