Factsheet for VIT_06s0004g04030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22990	Soybean	cytosol	30.64	54.14
KRH29875	Soybean	plastid	51.49	50.42
KRH25010	Soybean	plastid	51.06	50.0
KRH10325	Soybean	plastid	38.72	49.19
VIT_13s0074g00770.t01	Wine grape	cytosol	15.32	41.86
VIT_08s0040g02700.t01	Wine grape	cytosol, plastid	45.11	39.26
VIT_11s0016g04220.t01	Wine grape	cytosol	20.43	35.82
AT2G28660.1	Thale cress	plastid	39.15	34.72
CDX77196	Canola	plastid	38.3	33.96
Bra035681.1-P	Field mustard	plastid	37.87	33.58
CDY31723	Canola	plastid	37.87	33.58
VIT_12s0055g00930.t01	Wine grape	plastid	23.4	32.93

Protein Annotations

EntrezGene:100263778	wikigene:100263778	Gene3D:3.30.70.100	MapMan:35.1	ProteinID:CBI16201	ProteinID:CBI16201.3
UniProt:D7SKM3	EMBL:FN594951	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0030001	GO:GO:0046872	GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	EntrezGene:LOC100263778	wikigene:LOC100263778	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814
PANTHER:PTHR22814:SF82	SUPFAM:SSF55008	UniParc:UPI0001BE0F30	ArrayExpress:VIT_06s0004g04030	EnsemblPlantsGene:VIT_06s0004g04030	EnsemblPlants:VIT_06s0004g04030.t01
unigene:Vvi.17720	RefSeq:XP_002281496	RefSeq:XP_002281496.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:5012673..5014168

Molecular Weight (calculated)

25711.8 Da

IEP (calculated)

11.756

GRAVY (calculated)

-0.504

Length

235 amino acids

Sequence
(BLAST)

001: MVRRGTRPIN HHNPYLSDRR RSRPLAPVPC SSRLPISPTL HHHKSRKSSA KQTDLRRKSS ADKNDLTSPP GSSRYLLSDT PFFNLLPDSD RVSALVPTQT
101: ARPLVPTQTT RPLVPTQTTR PLVPTKTARP RRLNSNDSPA LVSSSSARSH DQVVVLWVSL HCKGCEGKLR KHISKMEGVT SFSIDLATKK VTVIGDVTPL
201: GVLASVSRVK NAQLWPSPTS SSSPLSSSAM TSLTY

Best Arabidopsis Sequence Match ( AT2G37390.2 )
(BLAST)

001: MKGRMFCASQ ASTAICSSMD HVHKSTTTDE DERNSGRAID RHNPIIKDGR RSFADDFIKL PTSAEDGEMS NKKLEIYKGR RSITGRRSTG GGGGGGAAAL
101: LKLITNDIGL ARKSFSCVAR PACDLIKTPV GSTRYLLGSD PDSITGSVDQ DPAKTVEAEA PAGEDKTLTE KKTTCGDTDQ VVVLKVSLHC RGCEGKVRKH
201: LARMQGVTSF NIDFAAKKVT VTGDITPLEI LDSISKVKNA QFWTNPTIPK PNVETQNP

Arabidopsis Description

NAKR2Protein SODIUM POTASSIUM ROOT DEFECTIVE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q58FZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.