CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29875	Soybean	plastid	90.83	90.83
KRH10325	Soybean	plastid	54.58	70.81
KRH22990	Soybean	cytosol	35.83	64.66
VIT_06s0004g04030.t01	Wine grape	plastid	50.0	51.06
KRH34745	Soybean	endoplasmic reticulum	12.92	38.27
Bra035681.1-P	Field mustard	plastid	41.25	37.36
CDX77196	Canola	plastid	41.25	37.36
CDY31723	Canola	plastid	41.25	37.36
KRH41596	Soybean	cytosol	20.0	36.36
KRH48431	Soybean	cytosol	20.42	36.3
AT2G28660.1	Thale cress	plastid	40.0	36.23
KRH60302	Soybean	cytosol, extracellular	19.58	35.61
KRH19750	Soybean	plastid	40.83	35.51
KRH32346	Soybean	plastid	41.25	35.36
KRH67578	Soybean	plastid	42.08	34.83
KRG95861	Soybean	plastid	42.08	34.83
KRH39252	Soybean	cytosol	19.17	34.07
KRH10507	Soybean	plastid	22.92	32.16
KRH58299	Soybean	mitochondrion	21.67	31.33
KRH42188	Soybean	cytosol, plastid	21.67	30.95
KRH43920	Soybean	cytosol	21.25	30.54
KRG92037	Soybean	cytosol	14.58	28.46
KRH33278	Soybean	cytosol	14.17	26.15
KRH71640	Soybean	cytosol, mitochondrion, plastid	14.17	26.15

Protein Annotations

EntrezGene:100789886	Gene3D:3.30.70.100	MapMan:35.1	EMBL:ACUP02007196	EnsemblPlantsGene:GLYMA_12G075300	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0030001	GO:GO:0046872	GO:GO:0046914
GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf	UniProt:I1LR34	InterPro:IPR006121	EnsemblPlants:KRH25010
ProteinID:KRH25010	ProteinID:KRH25010.1	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF82
SUPFAM:SSF55008	UniParc:UPI000233C2D2	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:5739446..5741060

Molecular Weight (calculated)

26624.5 Da

IEP (calculated)

10.605

GRAVY (calculated)

-0.577

Length

240 amino acids

Sequence
(BLAST)

001: MKGIDLFCSS SGSTAVTSSM HHRSTLQRST KSFDHDRRKS QLHVPCSSQL PINPKPYFEK HRKSSADKQN WDMRRKSSAD VNDFYTHTHA SADGSSRRYL
101: FGDGPFIEWV SESNKISAMV PSQHDVKVKD KLVVKNRNDL PTLRSSSSAR SKDQVVVLRV SLHCKACEGK VRKHISKMEG VTSFSIDMET KKVIIVGDVT
201: PLGVLASVSK VKNAQLWPSS TSSSSLLLSS SSRPTSPWST

Best Arabidopsis Sequence Match ( AT2G28660.1 )
(BLAST)

001: MRFSDIFCSS PASTAVRHST LHHDGNVTGG RRSFQSHLRS QNPSKKKDKT VPCFSSEMPL IPIPRHLSCR NSFESPSGFR PKIASARGSD VQIRRKSSAD
101: VSDLRRSRSS LLSSSSRYLL KDHKSLKGDD KDLWLSSDRS KDLILYRDRN VTSSASSSSS SSSSSFSSSV TNVSSPAPST DDQVVVLRVS IHCKGCEGKV
201: RKHISKMEGV TSYTIDLATK KVTVVGKITP VGLVESISKV KFAQLWPSSS SPPFPHIPNY SLLKS

Arabidopsis Description

At2g28660 [Source:UniProtKB/TrEMBL;Acc:Q7XZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.