CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035681.1-P	Field mustard	plastid	97.74	97.74
CDY31723	Canola	plastid	96.6	96.6
AT2G28660.1	Thale cress	plastid	78.11	78.11
KRH22990	Soybean	cytosol	22.64	45.11
KRH10325	Soybean	plastid	30.57	43.78
CDY08589	Canola	cytosol, plastid	12.45	43.42
CDY00957	Canola	cytosol, plastid	12.45	43.42
KRH25010	Soybean	plastid	37.36	41.25
KRH29875	Soybean	plastid	36.98	40.83
CDY04920	Canola	cytosol, plastid	11.32	38.96
VIT_06s0004g04030.t01	Wine grape	plastid	33.96	38.3
CDY55410	Canola	cytosol	17.74	37.01
CDX94814	Canola	cytosol	17.36	32.86
CDY52751	Canola	cytosol	29.81	31.6
CDX72154	Canola	cytosol	12.45	31.43
CDY71670	Canola	cytosol	12.45	31.43
CDY67353	Canola	cytosol, plastid	29.43	30.59
CDY07583	Canola	cytosol	27.92	30.45
CDX73547	Canola	cytosol, plastid	28.68	30.04
CDX93383	Canola	cytosol	28.3	28.2
CDY18449	Canola	cytosol	28.3	27.99
CDX74966	Canola	cytosol	27.92	27.21
CDY68400	Canola	plastid	29.81	27.15
CDX91358	Canola	cytosol	27.55	26.94
CDX67640	Canola	cytosol	12.45	26.19
CDY04859	Canola	cytosol	29.81	25.9
CDY14145	Canola	cytosol, mitochondrion, peroxisome, plastid	11.32	25.42
CDY10437	Canola	cytosol, plastid	28.68	23.97
CDX76052	Canola	cytosol	12.45	23.91
CDY69094	Canola	cytosol	9.81	23.21
CDY55409	Canola	nucleus	10.94	20.0
CDY43346	Canola	cytosol	12.83	20.0
CDY32007	Canola	plastid	12.45	17.84

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.2	GO:A0A078CJ31	EnsemblPlants:CDX77196	ProteinID:CDX77196	ProteinID:CDX77196.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00127844001	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	InterPro:NAKR2/3	PFAM:PF00403
PIRSF:PIRSF011221	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF82	SUPFAM:SSF55008	UniParc:UPI0004EEB913
SEG:seg	:	:	:	:	:

Description

BnaC04g39910D

Coordinates

chrLK031809:+:1978850..1980980

Molecular Weight (calculated)

28945.0 Da

IEP (calculated)

10.630

GRAVY (calculated)

-0.611

Length

265 amino acids

Sequence
(BLAST)

001: MRISDIFCSS PASTAVRRST LPHDGEITGG RRSVDSLRRS QNPNNNRDKT APCFASEMPF IPIPRPVMSC RNSFESSRGR KITTAHGGEV QTRRKSSADV
101: SDVLRRTKSS LQGSSSSRYL LKDYKSYKED DKDFWLSSSD RSKDLIPFRA RNVTISSSST SSSSSSSVTN GSSPSPSTDD DQVVVLRVSI HCKGCEGKVR
201: KHISKMEGVT SYTIDIATKK VTVVGKVTPS GVVESISKVK FAQLWPSSSS PPFPHVPNHS PLIKS

Best Arabidopsis Sequence Match ( AT2G28660.1 )
(BLAST)

001: MRFSDIFCSS PASTAVRHST LHHDGNVTGG RRSFQSHLRS QNPSKKKDKT VPCFSSEMPL IPIPRHLSCR NSFESPSGFR PKIASARGSD VQIRRKSSAD
101: VSDLRRSRSS LLSSSSRYLL KDHKSLKGDD KDLWLSSDRS KDLILYRDRN VTSSASSSSS SSSSSFSSSV TNVSSPAPST DDQVVVLRVS IHCKGCEGKV
201: RKHISKMEGV TSYTIDLATK KVTVVGKITP VGLVESISKV KFAQLWPSSS SPPFPHIPNY SLLKS

Arabidopsis Description

At2g28660 [Source:UniProtKB/TrEMBL;Acc:Q7XZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.