CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68400	Canola	plastid	82.97	90.38
CDY55410	Canola	cytosol	35.02	87.4
CDY04859	Canola	cytosol	79.81	82.95
AT5G02600.1	Thale cress	plastid	81.07	80.56
CDY55409	Canola	nucleus	34.07	74.48
CDY00957	Canola	cytosol, plastid	10.41	43.42
CDY08589	Canola	cytosol, plastid	10.41	43.42
GSMUA_Achr4P30560_001	Banana	plastid	25.87	42.49
CDY04920	Canola	cytosol, plastid	10.09	41.56
GSMUA_Achr2P16130_001	Banana	mitochondrion, plastid	27.76	41.12
GSMUA_Achr7P15330_001	Banana	plastid	25.24	37.56
EER90630	Sorghum	plastid	25.24	37.56
Zm00001d034634_P001	Maize	plastid	24.61	37.14
GSMUA_Achr9P03120_001	Banana	plastid	25.87	36.94
GSMUA_Achr6P34370_001	Banana	plastid	25.87	36.94
Zm00001d012973_P001	Maize	plastid	24.29	36.49
Os03t0819400-01	Rice	plastid	23.34	36.45
GSMUA_Achr10P...	Banana	cytosol, plastid	20.19	36.36
GSMUA_Achr7P10400_001	Banana	plastid	23.97	35.85
CDY52751	Canola	cytosol	27.76	35.2
CDY07583	Canola	cytosol	26.5	34.57
HORVU5Hr1G112560.1	Barley	plastid	22.4	34.3
CDY67353	Canola	cytosol, plastid	27.44	34.12
CDX73547	Canola	cytosol, plastid	27.13	33.99
TraesCS5A01G475200.1	Wheat	plastid	22.4	33.97
TraesCS5B01G488200.1	Wheat	plastid	22.08	33.18
CDX93383	Canola	cytosol	27.13	32.33
CDX91358	Canola	cytosol	27.44	32.1
CDX74966	Canola	cytosol	27.44	31.99
CDY18449	Canola	cytosol	26.81	31.72
CDX94814	Canola	cytosol	13.25	30.0
CDX72154	Canola	cytosol	9.78	29.52
CDY71670	Canola	cytosol	9.78	29.52
CDX77196	Canola	plastid	23.97	28.68
CDY31723	Canola	plastid	23.66	28.3
CDY14145	Canola	cytosol, mitochondrion, peroxisome, plastid	10.09	27.12
CDX67640	Canola	cytosol	9.78	24.6
Zm00001d038419_P001	Maize	cytosol	16.72	23.35
CDX76052	Canola	cytosol	9.78	22.46
CDY69094	Canola	cytosol	7.57	21.43
CDY43346	Canola	cytosol	9.78	18.24
CDY32007	Canola	plastid	9.78	16.76

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	GO:A0A078FBR4	UniProt:A0A078FBR4	EnsemblPlants:CDY10437	ProteinID:CDY10437
ProteinID:CDY10437.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810	GO:GO:0008150	GO:GO:0030001
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00032357001	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	PFAM:PF00403
PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF130	SUPFAM:SSF55008	UniParc:UPI0004EE830F	SEG:seg

Description

BnaCnng03380DBnaCnng03380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBR4]

Coordinates

chrLK032003:+:490924..492484

Molecular Weight (calculated)

34337.0 Da

IEP (calculated)

7.198

GRAVY (calculated)

-0.729

Length

317 amino acids

Sequence
(BLAST)

001: MDQPSQPSSS SPTVRLGGRA IDRHNPIIRD GRRFTPPPSP NHNSSSAPPS SSSTYHTPLK TRLGLESSEA TRVSKRKSKK SQFDAGKSPI SCFTSDTPQG
101: SSRYLLSNPV FFDGFVDSDP IPLPIEPEIT MDDDLDKNHE DTLVINASKH LSSSQSFLEK KQPDFFDGFL DYDPVMSPDN PFSEPTKDAS SPDNPLSEPT
201: KASPTASQSS LEDKDSSSPD FKFSPPQPPP PPPPPSPPPM ENNSSSDQVV VLRVSLHCKG CAGKVKKHLS KLKGVTSFNI DFAAKKVTVT GDVTPLTVLA
301: SISKVKNAQV WPETIQK

Best Arabidopsis Sequence Match ( AT5G02600.1 )
(BLAST)

001: MLCASQASTT TLCSTMDQTS QPSSSSSATI RLGGRAIDRH NPIIRDGRRL TPPPSPNLNP SSSSSSTYHT PLMTRLGLES SEQKRLAKRK SKKGDSDVGK
101: SPVSCFSSDT PQGSSRYLLS NPVFFDGFVD SDPIPIPIDE PEITKADDLN NFHEDRLIIN ASKYLSTSAS FLEKKQPDFF EGFLDYEPVL SPDNPFSEPT
201: KASPTASLSS LEDKDVSSPD FKFSPPPPPP PSPPQSSPPS PPEKNSSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSY NIDFAAKKVT VTGDVTPLTV
301: LASISKVKNA QFWPEIIQK

Arabidopsis Description

NAKR1Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDS4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.