CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08589	Canola	cytosol, plastid	25.98	43.42
CDY00957	Canola	cytosol, plastid	25.98	43.42
CDY04920	Canola	cytosol, plastid	25.2	41.56
CDY04859	Canola	cytosol	88.19	36.72
CDY10437	Canola	cytosol, plastid	87.4	35.02
CDY68400	Canola	plastid	65.35	28.52
CDY71670	Canola	cytosol	22.83	27.62
CDX72154	Canola	cytosol	22.83	27.62
CDY14145	Canola	cytosol, mitochondrion, peroxisome, plastid	25.2	27.12
CDX94814	Canola	cytosol	29.13	26.43
CDX67640	Canola	cytosol	22.83	23.02
CDY52751	Canola	cytosol	43.31	22.0
CDY07583	Canola	cytosol	41.73	21.81
CDY67353	Canola	cytosol, plastid	42.52	21.18
CDX76052	Canola	cytosol	22.83	21.01
CDX73547	Canola	cytosol, plastid	41.73	20.95
CDX93383	Canola	cytosol	40.94	19.55
CDY18449	Canola	cytosol	40.16	19.03
CDX91358	Canola	cytosol	40.16	18.82
CDX74966	Canola	cytosol	40.16	18.75
CDY31723	Canola	plastid	37.8	18.11
CDX77196	Canola	plastid	37.01	17.74
CDY43346	Canola	cytosol	22.83	17.06
CDY69094	Canola	cytosol	14.96	16.96
CDY32007	Canola	plastid	22.83	15.68
CDY55409	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	GO:A0A078IVD3	UniProt:A0A078IVD3	EnsemblPlants:CDY55410	ProteinID:CDY55410
ProteinID:CDY55410.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810	GO:GO:0008150	GO:GO:0030001
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00016812001	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	PFAM:PF00403
PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF130	SUPFAM:SSF55008	UniParc:UPI0004EEE518	SEG:seg

Description

BnaCnng28760DBnaCnng28760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVD3]

Coordinates

chrLK033400:+:17894..18578

Molecular Weight (calculated)

13650.4 Da

IEP (calculated)

10.207

GRAVY (calculated)

-0.494

Length

127 amino acids

Sequence
(BLAST)

001: MSPDNPFSEP TKASPTASES SLADQDFSSP DLKFSPPQPP PPPPPPSPQP PEKSSSDQVV ILRVSLHCKG CAGKVKKHLS KLKGVTSFKM DFAAKKVTVT
101: GDVTPLTVLS TISKVKNAQF WPEIIRK

Best Arabidopsis Sequence Match ( AT5G02600.1 )
(BLAST)

001: MLCASQASTT TLCSTMDQTS QPSSSSSATI RLGGRAIDRH NPIIRDGRRL TPPPSPNLNP SSSSSSTYHT PLMTRLGLES SEQKRLAKRK SKKGDSDVGK
101: SPVSCFSSDT PQGSSRYLLS NPVFFDGFVD SDPIPIPIDE PEITKADDLN NFHEDRLIIN ASKYLSTSAS FLEKKQPDFF EGFLDYEPVL SPDNPFSEPT
201: KASPTASLSS LEDKDVSSPD FKFSPPPPPP PSPPQSSPPS PPEKNSSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSY NIDFAAKKVT VTGDVTPLTV
301: LASISKVKNA QFWPEIIQK

Arabidopsis Description

NAKR1Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDS4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.