Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04859 | Canola | cytosol | 96.55 | 45.9 |
| CDY68400 | Canola | plastid | 82.76 | 41.24 |
| CDY10437 | Canola | cytosol, plastid | 74.48 | 34.07 |
| CDX91358 | Canola | cytosol | 26.9 | 14.39 |
| CDX74966 | Canola | cytosol | 26.9 | 14.34 |
| CDX93383 | Canola | cytosol | 25.52 | 13.91 |
| CDY18449 | Canola | cytosol | 25.52 | 13.81 |
| CDY67353 | Canola | cytosol, plastid | 24.14 | 13.73 |
| CDY52751 | Canola | cytosol | 23.45 | 13.6 |
| CDY07583 | Canola | cytosol | 22.76 | 13.58 |
| CDX73547 | Canola | cytosol, plastid | 22.76 | 13.04 |
| CDX77196 | Canola | plastid | 20.0 | 10.94 |
| CDY31723 | Canola | plastid | 18.62 | 10.19 |
| CDY69094 | Canola | cytosol | 6.21 | 8.04 |
| CDX94814 | Canola | cytosol | 5.52 | 5.71 |
| CDY00957 | Canola | cytosol, plastid | 1.38 | 2.63 |
| CDY08589 | Canola | cytosol, plastid | 1.38 | 2.63 |
| CDY04920 | Canola | cytosol, plastid | 1.38 | 2.6 |
| CDY14145 | Canola | cytosol, mitochondrion, peroxisome, plastid | 1.38 | 1.69 |
| CDY32007 | Canola | plastid | 1.38 | 1.08 |
| CDY71670 | Canola | cytosol | 0.69 | 0.95 |
| CDX72154 | Canola | cytosol | 0.69 | 0.95 |
| CDX67640 | Canola | cytosol | 0.69 | 0.79 |
| CDX76052 | Canola | cytosol | 0.69 | 0.72 |
| CDY43346 | Canola | cytosol | 0.69 | 0.59 |
| CDY55410 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY55409 | EnsemblPlantsGene:GSBRNA2T00016811001 | ProteinID:CDY55409 | ProteinID:CDY55409.1 | SEG:seg | UniParc:UPI0004EDDFFC |
| UniProt:A0A078J0Q8 | MapMan:35.1 | : | : | : | : |
Description
BnaCnng28750DBnaCnng28750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0Q8]
Coordinates
chrLK033400:+:17348..17785
Molecular Weight (calculated)
15767.4 Da
IEP (calculated)
8.219
GRAVY (calculated)
-0.730
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCASQASTR DICSTMEPSS ATIRLGGRAI DRHNPIIRDD RRFTPPPSPN HNSSTSSASS STYHTPLKTR LGLESSEQPR VAKRKSKKGQ CNGGKSPIGC
101: PNSDTPQSSS RYLLSNPVFF DGFVDSDPIP LPIESEITMC DELDK
101: PNSDTPQSSS RYLLSNPVFF DGFVDSDPIP LPIESEITMC DELDK
001: MLCASQASTT TLCSTMDQTS QPSSSSSATI RLGGRAIDRH NPIIRDGRRL TPPPSPNLNP SSSSSSTYHT PLMTRLGLES SEQKRLAKRK SKKGDSDVGK
101: SPVSCFSSDT PQGSSRYLLS NPVFFDGFVD SDPIPIPIDE PEITKADDLN NFHEDRLIIN ASKYLSTSAS FLEKKQPDFF EGFLDYEPVL SPDNPFSEPT
201: KASPTASLSS LEDKDVSSPD FKFSPPPPPP PSPPQSSPPS PPEKNSSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSY NIDFAAKKVT VTGDVTPLTV
301: LASISKVKNA QFWPEIIQK
101: SPVSCFSSDT PQGSSRYLLS NPVFFDGFVD SDPIPIPIDE PEITKADDLN NFHEDRLIIN ASKYLSTSAS FLEKKQPDFF EGFLDYEPVL SPDNPFSEPT
201: KASPTASLSS LEDKDVSSPD FKFSPPPPPP PSPPQSSPPS PPEKNSSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSY NIDFAAKKVT VTGDVTPLTV
301: LASISKVKNA QFWPEIIQK
Arabidopsis Description
NAKR1Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDS4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.