Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- extracellular 3
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 3
- vacuole 3
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029854.1-P | Field mustard | cytosol, plastid | 98.68 | 98.68 |
| CDY08589 | Canola | cytosol, plastid | 98.68 | 98.68 |
| CDY04920 | Canola | cytosol, plastid | 86.84 | 85.71 |
| TraesCS7D01G342900.1 | Wheat | cytosol | 81.58 | 80.52 |
| TraesCS7B01G247000.1 | Wheat | cytosol | 81.58 | 80.52 |
| Os08t0205400-01 | Rice | extracellular, plasma membrane | 82.89 | 77.78 |
| Zm00001d031132_P002 | Maize | cytosol | 81.58 | 73.81 |
| EES17440 | Sorghum | cytosol, plastid | 81.58 | 71.26 |
| AT1G66240.1 | Thale cress | cytosol, plastid | 92.11 | 66.04 |
| CDY14145 | Canola | cytosol, mitochondrion, peroxisome, plastid | 86.84 | 55.93 |
| CDX72154 | Canola | cytosol | 76.32 | 55.24 |
| CDY71670 | Canola | cytosol | 76.32 | 55.24 |
| GSMUA_Achr6P07500_001 | Banana | cytosol, plastid | 78.95 | 53.57 |
| CDX67640 | Canola | cytosol | 77.63 | 46.83 |
| CDX76052 | Canola | cytosol | 76.32 | 42.03 |
| TraesCS7A01G335400.1 | Wheat | cytosol | 81.58 | 37.13 |
| CDY43346 | Canola | cytosol | 77.63 | 34.71 |
| CDY32007 | Canola | plastid | 77.63 | 31.89 |
| CDY55410 | Canola | cytosol | 43.42 | 25.98 |
| CDX94814 | Canola | cytosol | 32.89 | 17.86 |
| CDY07583 | Canola | cytosol | 46.05 | 14.4 |
| CDY67353 | Canola | cytosol, plastid | 47.37 | 14.12 |
| CDY52751 | Canola | cytosol | 46.05 | 14.0 |
| CDX73547 | Canola | cytosol, plastid | 46.05 | 13.83 |
| CDY69094 | Canola | cytosol | 18.42 | 12.5 |
| CDX77196 | Canola | plastid | 43.42 | 12.45 |
| CDY31723 | Canola | plastid | 43.42 | 12.45 |
| CDY68400 | Canola | plastid | 46.05 | 12.03 |
| CDY04859 | Canola | cytosol | 46.05 | 11.48 |
| CDX91358 | Canola | cytosol | 40.79 | 11.44 |
| CDX74966 | Canola | cytosol | 40.79 | 11.4 |
| CDX93383 | Canola | cytosol | 39.47 | 11.28 |
| CDY18449 | Canola | cytosol | 39.47 | 11.19 |
| CDY10437 | Canola | cytosol, plastid | 43.42 | 10.41 |
| CDY55409 | Canola | nucleus | 2.63 | 1.38 |
Protein Annotations
| MapMan:25.5.2.3 | Gene3D:3.30.70.100 | GO:A0A078EII7 | EnsemblPlants:CDY00957 | ProteinID:CDY00957 | ProteinID:CDY00957.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 |
| EnsemblPlantsGene:GSBRNA2T00110968001 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 | PFAM:PF00403 | PFscan:PS50846 |
| PANTHER:PTHR22814 | PANTHER:PTHR22814:SF172 | SUPFAM:SSF55008 | UniParc:UPI0004EB10BF | : | : |
Description
BnaC05g42430D
Coordinates
chrLK031923:-:311554..312660
Molecular Weight (calculated)
8146.9 Da
IEP (calculated)
8.216
GRAVY (calculated)
-0.136
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MSQTVVLRVA MSCEGCVGAV KRVLGKMEGV ESFDVDIKEQ KVTVKGNVQP DAVLQTVSKT GKKSAFWDTE AETAKA
001: MLKDLFQAVS YQNTASLSLF QALSVVESKA MSQTVVLRVA MTCEGCVGAV KRVLGKMEGV ESFDVDIKEQ KVTVKGNVQP DAVLQTVTKT GKKTAFWEAE
101: GETAKA
101: GETAKA
Arabidopsis Description
ATX1homolog of anti-oxidant 1 [Source:TAIR;Acc:AT1G66240]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.