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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67640
CDX72154
CDX76052
CDY00957
CDY08589
CDY32007
CDY43346
CDY71670

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G44790.1 CDY00957 AT1G66240.1 17223078
AT5G44790.1 CDY08589 AT1G66240.1 17223078
AT5G44790.1 CDX67640 AT3G56240.1 17223078
AT5G44790.1 CDX72154 AT3G56240.1 17223078
AT5G44790.1 CDX76052 AT3G56240.1 17223078
AT5G44790.1 CDY32007 AT3G56240.1 17223078
AT5G44790.1 CDY43346 AT3G56240.1 17223078
AT5G44790.1 CDY71670 AT3G56240.1 17223078
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY67659 Canola cytosol 97.77 95.97
Bra027573.1-P Field mustard cytosol 98.8 57.58
CDY39400 Canola cytosol 87.16 50.95
CDY50771 Canola cytosol 86.13 50.6
HORVU6Hr1G031960.1 Barley plastid 48.97 49.83
AT5G44790.1 Thale cress cytosol 83.73 48.85
VIT_01s0011g01360.t01 Wine grape cytosol 70.38 41.1
KRH58516 Soybean cytosol 69.01 40.54
KRH12191 Soybean cytosol 68.84 40.36
PGSC0003DMT400024409 Potato cytosol 68.84 40.12
Solyc02g068490.2.1 Tomato cytosol 68.84 40.08
KRH37212 Soybean cytosol 67.64 40.06
KRH42397 Soybean cytosol 67.64 39.74
GSMUA_Achr5P26800_001 Banana cytosol 58.73 36.65
TraesCS6B01G184800.1 Wheat cytosol 60.79 36.52
GSMUA_Achr8P06970_001 Banana cytosol 58.05 35.91
EES06348 Sorghum cytosol 61.13 35.81
Zm00001d053783_P001 Maize plasma membrane 60.79 35.57
Os02t0172600-00 Rice cytosol 60.96 35.56
TraesCS6D01G146500.1 Wheat cytosol 60.62 35.47
KXG20553 Sorghum plasma membrane 61.13 35.45
TraesCS6A01G156900.1 Wheat cytosol 60.45 35.41
TraesCS7A01G480100.1 Wheat cytosol 60.1 35.06
Os06t0665800-01 Rice cytosol 60.1 34.99
TraesCS7D01G467100.1 Wheat cytosol 59.93 34.97
TraesCS7B01G382300.1 Wheat cytosol 59.93 34.97
HORVU7Hr1G108890.1 Barley cytosol, mitochondrion 56.85 32.45
CDY26408 Canola golgi, nucleus, plasma membrane 9.59 32.37
Zm00001d046953_P002 Maize cytosol, endoplasmic reticulum, plasma membrane 54.11 30.56
CDY72630 Canola golgi, plasma membrane, vacuole 15.58 26.15
CDX93870 Canola endoplasmic reticulum, plasma membrane 28.42 22.74
CDY50396 Canola cytosol 36.99 22.2
CDY49160 Canola cytosol 36.82 22.1
CDX91834 Canola cytosol, peroxisome, plasma membrane 31.16 21.21
CDY51690 Canola cytosol, plasma membrane, vacuole 6.16 21.05
CDY51646 Canola cytosol, plasma membrane, vacuole 7.02 21.03
CDY25498 Canola mitochondrion 37.16 20.99
CDY34353 Canola mitochondrion 36.64 20.74
CDX92394 Canola plastid 21.06 13.9
CDY16605 Canola plastid 21.06 13.9
CDX68986 Canola plastid 20.38 12.71
CDX75363 Canola plastid 20.21 12.59
CDY28160 Canola cytosol 15.58 12.01
CDX68627 Canola cytosol, plasma membrane, vacuole 15.24 11.74
Zm00001d027860_P001 Maize plasma membrane 3.08 10.71
CDY30170 Canola cytosol, peroxisome, plasma membrane 15.92 10.63
CDY62400 Canola plasma membrane 15.75 10.55
CDY28206 Canola plasma membrane 10.96 8.88
CDX75636 Canola mitochondrion 11.99 8.57
CDX69288 Canola plastid 11.99 8.55
CDY69827 Canola plasma membrane 9.08 8.41
CDY51090 Canola cytosol 15.41 8.27
CDY69511 Canola plasma membrane 9.93 8.1
CDX68625 Canola plasma membrane 9.76 7.81
CDY36489 Canola cytosol 15.24 7.75
Zm00001d011553_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 2.4 7.65
CDY46080 Canola plastid 8.39 7.26
CDY08717 Canola cytosol, nucleus, plasma membrane 15.24 5.71
CDX68623 Canola cytosol, endoplasmic reticulum, plasma membrane 2.23 2.38
CDY51647 Canola golgi, plasma membrane, vacuole 0.86 1.45
CDY67984 Canola cytosol, peroxisome, plasma membrane 0.0 0.0
CDY67923 Canola endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 0.0 0.0
CDY67922 Canola cytosol 0.0 0.0
CDY51648 Canola cytosol 0.0 0.0
Protein Annotations
Gene3D:2.70.150.20MapMan:24.1.2.1.1Gene3D:3.30.70.100GO:A0A078JU61UniProt:A0A078JU61InterPro:ATPase_P-typ_transduc_dom_A_sf
EnsemblPlants:CDY69037ProteinID:CDY69037ProteinID:CDY69037.1GO:GO:0003674GO:GO:0005488GO:GO:0005507
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0030001
GO:GO:0046872EnsemblPlantsGene:GSBRNA2T00082566001InterPro:HMA_Cu_ion-bdInterPro:HMA_domInterPro:HMA_dom_sfInterPro:Heavy-metal-associated_CS
InterPro:IPR006121PFAM:PF00122PFAM:PF00403PRINTS:PR00942ScanProsite:PS01047PFscan:PS50846
PANTHER:PTHR43520PANTHER:PTHR43520:SF13InterPro:P_typ_ATPaseSUPFAM:SSF55008SUPFAM:SSF81653TIGRFAMs:TIGR00003
TIGRFAMs:TIGR01494TMHMM:TMhelixUniParc:UPI0004EE0745SEG:seg::
Description
BnaCnng61530DBnaCnng61530D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JU61]
Coordinates
chrLK038498:+:1803..4657
Molecular Weight (calculated)
62575.6 Da
IEP (calculated)
4.610
GRAVY (calculated)
0.225
Length
584 amino acids
Sequence
(BLAST)
001: MAPSRRDIQL TRITGHSLGS SDAENEEMEG VRLLDSYDDD EENAHFLSKI EGGSGDSGLK KIQVGITGMT CAACSNAVEG ALMSVSGVFK ASVALLQNRA
101: DVVFDPKLIK EEDIKEAIED AGFEAEILAD PVTAGTKTTL VGQFTVGGMT CAACVNSVEG ILKDLPGVKR AVVALATSLG EVEYDPNIIN KDDIITAIED
201: AGFEGSLVQS NQQDKLLLRV DGVLNELDAQ VLEGILTRLN GVRQFRVDSL SGELDVVFDP EVVNSRTLVD DIEGEGYGKF KLRAMSPYER LTSKDTGEAS
301: KMFRRFICSL SLAIPLFCIQ VICPYIAALN NVLVWRCGPF MMSDWFKWGL VSIIQFVIGK RFYVAAWRAL RNGSTNMDVL VALGTSASYF YSVGALLYGA
401: VTGFWSPTYF DASAMLITFV LLGKYLESLA KGKTSDAMKK LVQLTPATAV LLIEGKGKKF VGEREIDALL IQPGDSLKVV PGGKIPADGV VVWGSSYVNE
501: SMVTGESVPV SKEVGSPVIG GTINTHGALH IKATKVGSDA VLSQIISLVE TAQMSKAPIQ QFADYVASIF VPVVVTLSLI TLVG
Best Arabidopsis Sequence Match ( AT5G44790.1 )
(BLAST)
0001: MAPSRRDLQL TPVTGGSSSQ ISDMEEVGLL DSYHNEANAD DILTKIEEGR DVSGLRKIQV GVTGMTCAAC SNSVEAALMN VNGVFKASVA LLQNRADVVF
0101: DPNLVKEEDI KEAIEDAGFE AEILAEEQTQ ATLVGQFTIG GMTCAACVNS VEGILRDLPG VKRAVVALST SLGEVEYDPN VINKDDIVNA IEDAGFEGSL
0201: VQSNQQDKLV LRVDGILNEL DAQVLEGILT RLNGVRQFRL DRISGELEVV FDPEVVSSRS LVDGIEEDGF GKFKLRVMSP YERLSSKDTG EASNMFRRFI
0301: SSLVLSIPLF FIQVICPHIA LFDALLVWRC GPFMMGDWLK WALVSVIQFV IGKRFYVAAW RALRNGSTNM DVLVALGTSA SYFYSVGALL YGAVTGFWSP
0401: TYFDASAMLI TFVLLGKYLE SLAKGKTSDA MKKLVQLTPA TAILLTEGKG GKLVGEREID ALLIQPGDTL KVHPGAKIPA DGVVVWGSSY VNESMVTGES
0501: VPVSKEVDSP VIGGTINMHG ALHMKATKVG SDAVLSQIIS LVETAQMSKA PIQKFADYVA SIFVPVVITL ALFTLVGWSI GGAVGAYPDE WLPENGTHFV
0601: FSLMFSISVV VIACPCALGL ATPTAVMVAT GVGATNGVLI KGGDALEKAH KVKYVIFDKT GTLTQGKATV TTTKVFSEMD RGEFLTLVAS AEASSEHPLA
0701: KAIVAYARHF HFFDESTEDG ETNNKDLQNS GWLLDTSDFS ALPGKGIQCL VNEKMILVGN RKLMSENAIN IPDHVEKFVE DLEESGKTGV IVAYNGKLVG
0801: VMGIADPLKR EAALVVEGLL RMGVRPIMVT GDNWRTARAV AKEVGIEDVR AEVMPAGKAD VIRSLQKDGS TVAMVGDGIN DSPALAAADV GMAIGAGTDV
0901: AIEAADYVLM RNNLEDVITA IDLSRKTLTR IRLNYVFAMA YNVVSIPIAA GVFFPVLRVQ LPPWAAGACM ALSSVSVVCS SLLLRRYKKP RLTTVLKITT
1001: E
Arabidopsis Description
RAN1Copper-transporting ATPase RAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.