CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, plasma membrane, vacuole
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28160	Canola	cytosol	96.83	96.83
CDY51647	Canola	golgi, plasma membrane, vacuole	40.37	88.44
AT4G30120.1	Thale cress	cytosol	63.19	88.38
CDY51646	Canola	cytosol, plasma membrane, vacuole	21.64	84.1
CDY72630	Canola	golgi, plasma membrane, vacuole	38.26	83.33
CDY51690	Canola	cytosol, plasma membrane, vacuole	18.07	80.12
CDY51648	Canola	cytosol	6.07	67.65
CDY69827	Canola	plasma membrane	53.3	64.13
VIT_11s0103g00370.t01	Wine grape	plasma membrane	59.37	62.67
CDY62400	Canola	plasma membrane	69.26	60.21
CDY30170	Canola	cytosol, peroxisome, plasma membrane	69.26	60.0
CDY69511	Canola	plasma membrane	55.01	58.24
CDX68625	Canola	plasma membrane	55.28	57.4
KRH02816	Soybean	plasma membrane	55.41	56.15
TraesCS7B01G320900.1	Wheat	plasma membrane	54.88	54.31
CDY28206	Canola	plasma membrane	50.66	53.26
GSMUA_Achr5P22660_001	Banana	plasma membrane	55.67	51.65
CDX68623	Canola	cytosol, endoplasmic reticulum, plasma membrane	35.22	48.9
HORVU5Hr1G094430.8	Barley	endoplasmic reticulum, plasma membrane	49.34	48.89
CDY51090	Canola	cytosol	66.36	46.23
TraesCS5A01G383400.1	Wheat	plasma membrane	49.6	46.08
TraesCS5B01G388000.1	Wheat	plasma membrane	50.26	45.96
TraesCS5D01G392700.1	Wheat	plasma membrane	50.13	44.55
TraesCS7A01G420000.1	Wheat	plasma membrane	54.88	44.3
CDY36489	Canola	cytosol	66.75	44.04
TraesCS7D01G412800.1	Wheat	plasma membrane	54.62	43.81
HORVU7Hr1G097210.4	Barley	plasma membrane	53.96	43.23
GSMUA_Achr8P24660_001	Banana	cytosol	53.56	43.15
GSMUA_Achr5P21940_001	Banana	extracellular, plasma membrane	53.17	43.1
TraesCS7A01G419500.1	Wheat	plasma membrane	55.28	42.54
KRH19069	Soybean	plasma membrane	61.48	42.52
TraesCS7D01G412400.1	Wheat	plasma membrane	55.94	42.27
HORVU7Hr1G097240.1	Barley	plasma membrane	55.28	41.53
EER96099	Sorghum	cytosol	48.81	41.34
Zm00001d005190_P001	Maize	plastid	48.81	41.2
TraesCS7B01G320100.2	Wheat	plasma membrane	55.54	41.15
Os06t0700700-02	Rice	plasma membrane	56.6	40.21
EER96100	Sorghum	cytosol	49.47	40.19
EER90320	Sorghum	plasma membrane	56.6	40.13
Zm00001d005189_P001	Maize	plasma membrane	48.94	38.49
Os07t0232900-01	Rice	cytosol, nucleus, plasma membrane	50.79	38.35
Zm00001d014669_P007	Maize	plasma membrane	55.41	38.22
Solyc07g009130.2.1	Tomato	plastid	59.1	34.41
CDY08717	Canola	cytosol, nucleus, plasma membrane	67.94	33.03
CDY26408	Canola	golgi, nucleus, plasma membrane	7.39	32.37
Zm00001d019226_P003	Maize	cytosol	35.75	30.35
CDY67984	Canola	cytosol, peroxisome, plasma membrane	8.18	25.31
CDY67922	Canola	cytosol	7.92	25.21
CDY67923	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	5.15	23.35
CDX91834	Canola	cytosol, peroxisome, plasma membrane	24.54	21.68
CDX75636	Canola	mitochondrion	22.56	20.93
CDY16605	Canola	plastid	24.41	20.9
CDX92394	Canola	plastid	24.41	20.9
CDY50771	Canola	cytosol	27.31	20.82
CDY39400	Canola	cytosol	27.44	20.82
CDX69288	Canola	plastid	22.43	20.76
CDY50396	Canola	cytosol	25.07	19.53
CDY49160	Canola	cytosol	24.8	19.32
CDY46080	Canola	plastid	16.75	18.81
CDX75363	Canola	plastid	23.09	18.68
CDY34353	Canola	mitochondrion	25.07	18.41
CDY25498	Canola	mitochondrion	24.93	18.28
CDX68986	Canola	plastid	22.56	18.27
CDX93870	Canola	endoplasmic reticulum, plasma membrane	17.55	18.22
CDY69037	Canola	cytosol	11.74	15.24
CDY67659	Canola	cytosol	11.74	14.96

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	GO:A0A078BWM2
InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	EnsemblPlants:CDX68627	ProteinID:CDX68627
ProteinID:CDX68627.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019829	GO:GO:0030001	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00130273001	InterPro:HAD-like_sf
InterPro:HAD_sf	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299
InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154
ScanProsite:PS01229	PFscan:PS50846	PANTHER:PTHR43338	InterPro:P_typ_ATPase	SUPFAM:SSF55008	SUPFAM:SSF56784
SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01512	TIGRFAMs:TIGR01525	TMHMM:TMhelix
UniParc:UPI0004EEE0AE	SEG:seg	:	:	:	:

Description

BnaC01g08260D

Coordinates

chrLK031789:-:269618..272661

Molecular Weight (calculated)

81493.2 Da

IEP (calculated)

6.057

GRAVY (calculated)

0.241

Length

758 amino acids

Sequence
(BLAST)

001: MADGEDTTKK NLKTSYFDVV GICCSMEVPL VGDVLRPLNG VKEFSVIVPS RTVIVVHDTF LISPLQIVKA LNEARLEASV RPYGETSFKS QWPSPFALVS
101: GVLIALSFLK YFYGLLEWFA VVAVVAGVYP ILAKAVASVT RFRLDINALT LIAVIATVCM EDYTEAATIV FLFSVADWLE SSAAHKASTV MSSLMSLAPR
201: KAVIAETGIE VDVDEVELNT VVSVKAGESI PIDGVVVDGS CDVDEKTLTG ESFPVSKQRD STVLAATINL NGYIKVKTTV LARDCVVAKM TKLVEEPQKS
301: QTKTQRFIDK CSRYYTPAVV VVAACFALIP FLLKVHNLSH WFHLALVVLV SGCPCGLILS TPVATFCALT KAATSGFLIK TGDCLETLAK IKIAAFDKTG
401: TITKAEFTVS DFKSLSHSIN LQNLIYWVSS IESKSSHPMA EALIDYARSV SIEPKPDMVE NFQNFPGEGV YGKIDGQDIY IGNKRIAQRA GCLTVPDSEA
501: DMKGGKTIGY IYIGEELTGS FSLLDGCRHG VAQALKELKS LGITTAMLTG DNRDAAMSIQ QQLGNALDIV HTELLPQDKA RIIDEFKSQG PTMMVGDGLN
601: DAPALAKADI GISMGISGSA LATETGDIIL MSNDLRKIPK GMRLAKRSHR KVIENVVLSV SIKGAIMGLG FAGYPLIWAA VLADAGTCLL VILNSMMLLR
701: DEREAVSACY RASPSSCTPS LLKFEEDLEV GLLQKSEETS NKSCCSGCCG GPKGTQQK

Best Arabidopsis Sequence Match ( AT2G19110.1 )
(BLAST)

0001: MALQNKEEEK KKVKKLQKSY FDVLGICCTS EVPIIENILK SLDGVKEYSV IVPSRTVIVV HDSLLISPFQ IAKALNEARL EANVRVNGET SFKNKWPSPF
0101: AVVSGLLLLL SFLKFVYSPL RWLAVAAVAA GIYPILAKAF ASIKRPRIDI NILVIITVIA TLAMQDFMEA AAVVFLFTIS DWLETRASYK ATSVMQSLMS
0201: LAPQKAIIAE TGEEVEVDEV KVDTVVAVKA GETIPIDGIV VDGNCEVDEK TLTGEAFPVP KQRDSTVWAG TINLNGYICV KTTSLAGDCV VAKMAKLVEE
0301: AQSSKTKSQR LIDKCSQYYT PAIILVSACV AIVPVIMKVH NLKHWFHLAL VVLVSGCPCG LILSTPVATF CALTKAATSG LLIKSADYLD TLSKIKIVAF
0401: DKTGTITRGE FIVIDFKSLS RDINLRSLLY WVSSVESKSS HPMAATIVDY AKSVSVEPRP EEVEDYQNFP GEGIYGKIDG NDIFIGNKKI ASRAGCSTVP
0501: EIEVDTKGGK TVGYVYVGER LAGFFNLSDA CRSGVSQAMA ELKSLGIKTA MLTGDNQAAA MHAQEQLGNV LDVVHGDLLP EDKSRIIQEF KKEGPTAMVG
0601: DGVNDAPALA TADIGISMGI SGSALATQTG NIILMSNDIR RIPQAVKLAR RARRKVVENV CLSIILKAGI LALAFAGHPL IWAAVLVDVG TCLLVIFNSM
0701: LLLREKKKIG NKKCYRASTS KLNGRKLEGD DDYVVDLEAG LLTKSGNGQC KSSCCGDKKN QENVVMMKPS SKTSSDHSHP GCCGDKKEEK VKPLVKDGCC
0801: SEKTRKSEGD MVSLSSCKKS SHVKHDLKMK GGSGCCASKN EKGKEVVAKS CCEKPKQQVE SVGDCKSGHC EKKKQAEDIV VPVQIIGHAL THVEIELQTK
0901: ETCKTSCCDS KEKVKETGLL LSSENTPYLE KGVLIKDEGN CKSGSENMGT VKQSCHEKGC SDEKQTGEIT LASEEETDDQ DCSSGCCVNE GTVKQSFDEK
1001: KHSVLVEKEG LDMETGFCCD AKLVCCGNTE GEVKEQCRLE IKKEEHCKSG CCGEEIQTGE ITLVSEEETE STNCSTGCCV DKEEVTQTCH EKPASLVVSG
1101: LEVKKDEHCE SSHRAVKVET CCKVKIPEAC ASKCRDRAKR HSGKSCCRSY AKELCSHRHH HHHHHHHHHV SA

Arabidopsis Description

HMA4Putative cadmium/zinc-transporting ATPase HMA4 [Source:UniProtKB/Swiss-Prot;Acc:O64474]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.