Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G63440.1 | CDY00957 | AT1G66240.1 | 16367966 |
| AT1G63440.1 | CDY08589 | AT1G66240.1 | 16367966 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91834 | Canola | cytosol, peroxisome, plasma membrane | 74.11 | 63.05 |
| KRH41158 | Soybean | plasma membrane | 56.99 | 61.36 |
| AT1G63440.1 | Thale cress | mitochondrion | 81.23 | 59.6 |
| CDY34353 | Canola | mitochondrion | 84.11 | 59.5 |
| CDY25498 | Canola | mitochondrion | 83.84 | 59.19 |
| VIT_02s0025g03640.t01 | Wine grape | golgi, peroxisome, plasma membrane | 38.9 | 57.26 |
| GSMUA_Achr5P12290_001 | Banana | plasma membrane | 43.29 | 56.43 |
| HORVU2Hr1G097010.1 | Barley | plasma membrane | 50.96 | 55.36 |
| CDY50396 | Canola | cytosol | 72.05 | 54.06 |
| CDY49160 | Canola | cytosol | 70.55 | 52.93 |
| Solyc08g080870.2.1 | Tomato | cytosol | 66.44 | 50.84 |
| KRG95266 | Soybean | cytosol | 68.22 | 50.61 |
| KRH77528 | Soybean | mitochondrion | 58.22 | 49.13 |
| CDY26408 | Canola | golgi, nucleus, plasma membrane | 11.37 | 47.98 |
| Zm00001d002708_P001 | Maize | mitochondrion | 62.33 | 45.55 |
| Os04t0556000-01 | Rice | plastid | 62.19 | 45.31 |
| EES11247 | Sorghum | mitochondrion | 61.51 | 44.81 |
| TraesCS2B01G429200.2 | Wheat | mitochondrion | 60.96 | 44.77 |
| TraesCS2D01G407800.5 | Wheat | plastid | 60.96 | 44.5 |
| TraesCS2A01G410400.3 | Wheat | mitochondrion | 61.1 | 44.11 |
| Zm00001d002705_P002 | Maize | cytosol, plastid | 60.82 | 42.86 |
| GSMUA_Achr5P12300_001 | Banana | cytosol | 46.16 | 42.28 |
| KXG26864 | Sorghum | cytosol, plasma membrane, plastid | 60.82 | 41.04 |
| GSMUA_Achr1P00300_001 | Banana | cytosol | 48.63 | 40.39 |
| CDY39400 | Canola | cytosol | 41.1 | 30.03 |
| CDY50771 | Canola | cytosol | 40.82 | 29.98 |
| CDY69037 | Canola | cytosol | 22.74 | 28.42 |
| CDY67659 | Canola | cytosol | 22.74 | 27.9 |
| CDY67923 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 6.3 | 27.54 |
| KRH59857 | Soybean | cytosol | 8.77 | 26.12 |
| VIT_02s0025g03630.t01 | Wine grape | cytosol | 68.36 | 25.77 |
| CDY51647 | Canola | golgi, plasma membrane, vacuole | 10.41 | 21.97 |
| CDY69827 | Canola | plasma membrane | 18.9 | 21.9 |
| CDX92394 | Canola | plastid | 26.44 | 21.81 |
| CDY16605 | Canola | plastid | 26.3 | 21.69 |
| CDY67984 | Canola | cytosol, peroxisome, plasma membrane | 6.85 | 20.41 |
| CDX75363 | Canola | plastid | 25.75 | 20.06 |
| CDX68986 | Canola | plastid | 25.62 | 19.98 |
| CDY69511 | Canola | plasma membrane | 18.36 | 18.72 |
| CDY72630 | Canola | golgi, plasma membrane, vacuole | 8.49 | 17.82 |
| CDX68625 | Canola | plasma membrane | 17.81 | 17.81 |
| CDX68627 | Canola | cytosol, plasma membrane, vacuole | 18.22 | 17.55 |
| CDY62400 | Canola | plasma membrane | 20.68 | 17.32 |
| CDY28160 | Canola | cytosol | 17.81 | 17.15 |
| CDY30170 | Canola | cytosol, peroxisome, plasma membrane | 20.41 | 17.03 |
| CDX75636 | Canola | mitochondrion | 18.9 | 16.89 |
| CDX69288 | Canola | plastid | 18.9 | 16.85 |
| CDY46080 | Canola | plastid | 14.66 | 15.85 |
| CDY28206 | Canola | plasma membrane | 14.79 | 14.98 |
| CDY51090 | Canola | cytosol | 21.1 | 14.15 |
| CDX68623 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 9.86 | 13.19 |
| CDY36489 | Canola | cytosol | 20.55 | 13.05 |
| CDY67922 | Canola | cytosol | 3.97 | 12.18 |
| PGSC0003DMT400032161 | Potato | cytosol, plasma membrane, vacuole | 2.19 | 12.12 |
| CDY51690 | Canola | cytosol, plasma membrane, vacuole | 2.33 | 9.94 |
| CDY08717 | Canola | cytosol, nucleus, plasma membrane | 20.55 | 9.62 |
| CDY51646 | Canola | cytosol, plasma membrane, vacuole | 2.47 | 9.23 |
| CDY51648 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.70.150.20 | MapMan:24.1.2.1.1 | Gene3D:3.30.70.100 | Gene3D:3.40.1110.10 | Gene3D:3.40.50.1000 | GO:A0A078DX39 |
| InterPro:ATPase_P-typ_P_site | InterPro:ATPase_P-typ_TM_dom_sf | InterPro:ATPase_P-typ_cyto_dom_N | InterPro:ATPase_P-typ_transduc_dom_A_sf | EnsemblPlants:CDX93870 | ProteinID:CDX93870 |
| ProteinID:CDX93870.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006812 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016787 | GO:GO:0019829 | GO:GO:0030001 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00156678001 | InterPro:HAD-like_sf |
| InterPro:HAD_sf | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 | InterPro:IPR023214 | InterPro:IPR023299 |
| InterPro:P-typ_ATPase_IB | PFAM:PF00122 | PFAM:PF00403 | PFAM:PF00702 | PRINTS:PR00119 | PRINTS:PR00942 |
| ScanProsite:PS00154 | PFscan:PS50846 | PANTHER:PTHR24093 | PANTHER:PTHR24093:SF417 | InterPro:P_typ_ATPase | SUPFAM:SSF55008 |
| SUPFAM:SSF56784 | SUPFAM:SSF81653 | SUPFAM:SSF81660 | SUPFAM:SSF81665 | TIGRFAMs:TIGR01494 | TIGRFAMs:TIGR01525 |
| TMHMM:TMhelix | UniParc:UPI0004EF03F6 | SEG:seg | : | : | : |
Description
BnaC04g20290D
Coordinates
chrLK031878:+:224119..231177
Molecular Weight (calculated)
80359.6 Da
IEP (calculated)
7.465
GRAVY (calculated)
0.207
Length
730 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDALPPLSY LQLKKLKFIM IPPLLSCDKL LEEIENAGFE AVLISTGDDV SKIDLKIDGE FTDESMTIVE RSLEALPGVQ SVEIKNGSDK ISVLYKPDVT
101: GPRNFIRVIE STVFGQSGHI KATVFSEGGV GRESQKQEEI RQYYKSFLWS LVFTVPVFLT AMVFMYIPGI KHLLMYKVIN MLTIGEIIRW LLATPVQFII
201: GWRFYVGSYK ALRRGSANMD VLIALGTNAA YFYSLYTTSA MLISFIILGK YLEIMAKGKT SQAIAKLMNL APDTAILLTV DEEGNVTGEE EIDGRLIQKN
301: DVIKIVPGAK VASDGCVIWG QSHVNESMIT GEARPVAKRK GDTVIGGTLN ENGVLHIKVT KVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV
401: IFLSFSTWLS WFLAGKLHWY PESWIPSSMD SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK
501: PVVVKTKLLK NMVLRKFYEL VAATAVNSEH PLAKAIVEYA KKFRDDEENP VWPEAHDFVS ITGNGVRATV NRREIMVGNK NLMSDYKITI SADAEELLAE
601: AEEMAQTGIL VAREAISILK SMNIKGIMVT GDNWGTANSV AREVDAKILA IDGKLIPNNQ GSCQGQGIYV YDLPSKFNKD LLQECSDMVP WVNFCSYFET
701: MGLVNRLRIL VKAGLIRISI LLNRSFILVF
101: GPRNFIRVIE STVFGQSGHI KATVFSEGGV GRESQKQEEI RQYYKSFLWS LVFTVPVFLT AMVFMYIPGI KHLLMYKVIN MLTIGEIIRW LLATPVQFII
201: GWRFYVGSYK ALRRGSANMD VLIALGTNAA YFYSLYTTSA MLISFIILGK YLEIMAKGKT SQAIAKLMNL APDTAILLTV DEEGNVTGEE EIDGRLIQKN
301: DVIKIVPGAK VASDGCVIWG QSHVNESMIT GEARPVAKRK GDTVIGGTLN ENGVLHIKVT KVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV
401: IFLSFSTWLS WFLAGKLHWY PESWIPSSMD SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK
501: PVVVKTKLLK NMVLRKFYEL VAATAVNSEH PLAKAIVEYA KKFRDDEENP VWPEAHDFVS ITGNGVRATV NRREIMVGNK NLMSDYKITI SADAEELLAE
601: AEEMAQTGIL VAREAISILK SMNIKGIMVT GDNWGTANSV AREVDAKILA IDGKLIPNNQ GSCQGQGIYV YDLPSKFNKD LLQECSDMVP WVNFCSYFET
701: MGLVNRLRIL VKAGLIRISI LLNRSFILVF
001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV
Arabidopsis Description
HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.