Factsheet for TraesCS2A01G410400.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G335400.1
TraesCS7B01G247000.1
TraesCS7D01G342900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63440.1	TraesCS7A01G335400.1	AT1G66240.1	16367966
AT1G63440.1	TraesCS7B01G247000.1	AT1G66240.1	16367966
AT1G63440.1	TraesCS7D01G342900.1	AT1G66240.1	16367966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G429200.2	Wheat	mitochondrion	96.34	97.99
HORVU2Hr1G097010.1	Barley	plasma membrane	64.59	97.17
TraesCS2D01G407800.5	Wheat	plastid	93.87	94.9
Zm00001d002708_P001	Maize	mitochondrion	86.15	87.19
Os04t0556000-01	Rice	plastid	86.25	87.03
EES11247	Sorghum	mitochondrion	85.56	86.33
GSMUA_Achr5P12290_001	Banana	plasma membrane	44.51	80.36
Zm00001d002705_P002	Maize	cytosol, plastid	81.21	79.25
KXG26864	Sorghum	cytosol, plasma membrane, plastid	83.28	77.82
PGSC0003DMT400032161	Potato	cytosol, plasma membrane, vacuole	10.09	77.27
VIT_02s0025g03640.t01	Wine grape	golgi, peroxisome, plasma membrane	36.99	75.4
Solyc08g080870.2.1	Tomato	cytosol	67.56	71.59
GSMUA_Achr5P12300_001	Banana	cytosol	55.49	70.39
CDX91834	Canola	cytosol, peroxisome, plasma membrane	58.46	68.88
KRH27938	Soybean	plasma membrane	18.99	67.61
AT1G63440.1	Thale cress	mitochondrion	65.88	66.93
KRH77529	Soybean	cytosol	63.11	65.3
GSMUA_Achr1P00300_001	Banana	cytosol	55.89	64.28
CDY50396	Canola	cytosol	61.03	63.41
CDY49160	Canola	cytosol	60.63	63.0
CDY34353	Canola	mitochondrion	64.09	62.79
CDY25498	Canola	mitochondrion	64.19	62.77
Bra003110.1-P	Field mustard	cytosol	60.63	62.74
CDX93870	Canola	endoplasmic reticulum, plasma membrane	44.11	61.1
Bra027641.1-P	Field mustard	mitochondrion	65.38	55.45
TraesCS6A01G158900.1	Wheat	plastid	50.94	52.87
TraesCS7A01G480100.1	Wheat	cytosol	45.99	46.45
TraesCS6A01G156900.1	Wheat	cytosol	45.1	45.74
VIT_02s0025g03630.t01	Wine grape	cytosol	69.24	36.16
TraesCS7A01G239700.1	Wheat	cytosol	25.52	32.13
TraesCS4A01G010800.1	Wheat	mitochondrion	25.32	28.76
TraesCS5A01G383400.1	Wheat	plasma membrane	20.67	25.61
TraesCS7A01G439100.1	Wheat	plastid	18.3	22.34
TraesCS7A01G420000.1	Wheat	plasma membrane	20.47	22.04
TraesCS7A01G419500.1	Wheat	plasma membrane	20.18	20.71

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829	GO:GO:0030001
GO:GO:0046872	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:Heavy-metal-associated_CS	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	InterPro:P-typ_ATPase_IB	PFAM:PF00122
PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00942	PRINTS:PR00943	ScanProsite:PS00154
ScanProsite:PS01047	PFscan:PS50846	PANTHER:PTHR24093	PANTHER:PTHR24093:SF417	InterPro:P_typ_ATPase	SUPFAM:SSF55008
SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2A01G410400	EnsemblPlants:TraesCS2A01G410400.3	TIGR:cd00371	TIGR:cd02094	SEG:seg

Description

No Description!

Coordinates

chr2A:-:668067714..668073115

Molecular Weight (calculated)

109112.0 Da

IEP (calculated)

5.724

GRAVY (calculated)

0.191

Length

1011 amino acids

Sequence
(BLAST)

0001: MAAGALFLAC FRGGGGGGGE GSGGRLALRP RYAPVPRRTK AAAVAGDLEA AAGAAEEEEE EKVVLFAVTG MTCAACAGSV EKAVKRLPGI HDAAVDVLGC
0101: RAQVAFYPAF VSEEKIRETI EDVGFGAKLI DEELKEKSIL VCRLHIKGMT CTSCANTVES ALQAVPGVQR ASVALAIEEA EIRYNRRVVA AIQLVNAVEE
0201: SGFEAILVTA GEDRSRIDLK VDGILNERSV MIVKSSVQAL PGVEDIKIDT ELQKITISYK PDQTGPRDLI EVIESAGSGH IAVSIYPEAD GREQHRNGEI
0301: TRYRQSFLWS LLFTIPVFLT SMVFMYIPGL KEGLDKKVVN MMSIGELLRW ILSTPVQFVI GRKFYTGSYK AMCHGSPNMD VLIALGTNTA YFYSVYSVLR
0401: AATSENYMST DFFETSSMLI SFILLGKYLE ILAKGKTSEA IAKLMDLAPE TATVLIYDSE GNVVSEKEID SRLIQKNDVI KVIPGGKVAS DGFVIWGQSH
0501: VNESMITGES RPVAKRKGDT VIGGTVNENG VLHVRATFVG SESALAQIVR LVESAQMAKA PVQKFADQIS KVFVPLVILL SLLTWLTWFL AGRFHGYPSS
0601: WIPSSMDSFQ LALQFGISVM VIACPCALGL ATPTAVMVAT GVGASQGVLI KGGQALESAQ KVDCIVFDKT GTLTIGKPIV VNTRLFKNMV LREFYDYVAA
0701: AEVNSEHPLA KAVVEHAKNF HSEETHIWPE ARDFISVTGH GVKAKISDSS VIVGNKSFML SLDIDVPVEA SEILMEEEEK AHTGIIVAMD QEIVGIISVS
0801: DPIKPNAHEV ISYLKSMKVE CIMVTGDNWG TANAIGKEVG IENIIAEAKP EQKAEKVKEL QDTATHPLTA FKSFDRSLQL SGKTVAMVGD GINDSPALVA
0901: ANVGMAIGAG TDVAIEAADI VLMKSNLEDV ITAIDLSRKA FFRIRMNYVW ALGYNIIGIP IAAGVLFPST RFRLPPWVAG AAMAASSVSV VCWSLLLRYY
1001: KRPLITQERQ A

Best Arabidopsis Sequence Match ( AT1G63440.1 )
(BLAST)

001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV

Arabidopsis Description

HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.