Factsheet for Bra027641.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra029854.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63440.1	Bra029854.1-P	AT1G66240.1	16367966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34353	Canola	mitochondrion	84.73	97.87
AT1G63440.1	Thale cress	mitochondrion	76.59	91.76
PGSC0003DMT400032161	Potato	cytosol, plasma membrane, vacuole	9.56	86.36
KRH41158	Soybean	plasma membrane	47.65	83.78
VIT_02s0025g03640.t01	Wine grape	golgi, peroxisome, plasma membrane	34.65	83.27
GSMUA_Achr5P12290_001	Banana	plasma membrane	38.09	81.07
Bra003110.1-P	Field mustard	cytosol	65.18	79.53
KRH59857	Soybean	cytosol	16.02	77.96
KRG95266	Soybean	cytosol	62.33	75.51
HORVU2Hr1G097010.1	Barley	plasma membrane	42.53	75.45
Solyc08g080870.2.1	Tomato	cytosol	59.14	73.9
KRH77528	Soybean	mitochondrion	53.52	73.76
GSMUA_Achr5P12300_001	Banana	cytosol	45.22	67.63
Zm00001d002708_P001	Maize	mitochondrion	56.46	67.37
Os04t0556000-01	Rice	plastid	56.46	67.17
EES11247	Sorghum	mitochondrion	56.21	66.87
TraesCS2D01G407800.5	Wheat	plastid	55.87	66.6
TraesCS2B01G429200.2	Wheat	mitochondrion	55.54	66.6
TraesCS2A01G410400.3	Wheat	mitochondrion	55.45	65.38
Zm00001d002705_P002	Maize	cytosol, plastid	55.29	63.61
GSMUA_Achr1P00300_001	Banana	cytosol	45.22	61.32
KXG26864	Sorghum	cytosol, plasma membrane, plastid	55.12	60.72
Bra027573.1-P	Field mustard	cytosol	38.42	45.71
Bra025102.1-P	Field mustard	cytosol	37.84	45.24
VIT_02s0025g03630.t01	Wine grape	cytosol	63.0	38.79
Bra002374.1-P	Field mustard	plastid	22.82	30.73
Bra011450.1-P	Field mustard	plastid	23.66	30.0
Bra024103.1-P	Field mustard	peroxisome, plasma membrane, vacuole	16.61	25.92
Bra011165.1-P	Field mustard	cytosol	16.02	25.2
Bra011164.1-P	Field mustard	cytosol, plasma membrane	17.62	24.08
Bra039194.1-P	Field mustard	plastid	15.02	23.13
Bra011750.1-P	Field mustard	plastid	15.44	22.49
Bra024107.1-P	Field mustard	plasma membrane	16.28	21.97
Bra024449.1-P	Field mustard	cytosol	16.69	16.72
Bra038842.1-P	Field mustard	cytosol	17.2	16.13

Protein Annotations

MapMan:10.4.2	Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.30.10
Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	EnsemblPlantsGene:Bra027641
EnsemblPlants:Bra027641.1	EnsemblPlants:Bra027641.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601
GO:GO:0004602	GO:GO:0005215	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0006810
GO:GO:0006812	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010273	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016787	GO:GO:0019829
GO:GO:0030001	GO:GO:0046688	GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	GO:GO:0099132
InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd
InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS	InterPro:IPR000889	InterPro:IPR006121	InterPro:IPR023214
InterPro:IPR023299	UniProt:M4EFS8	InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00255	PFAM:PF00403
PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00942	ScanProsite:PS00154	ScanProsite:PS00460	ScanProsite:PS00763
ScanProsite:PS01047	PFscan:PS50846	PFscan:PS51355	PANTHER:PTHR24093	PANTHER:PTHR24093:SF417	InterPro:P_typ_ATPase
SUPFAM:SSF52833	SUPFAM:SSF55008	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR00003
TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix	InterPro:Thioredoxin-like_sf	UniParc:UPI0002542411	SEG:seg

Description

AT1G63440 (E=0.0) HMA5 | HMA5 (HEAVY METAL ATPASE 5); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism

Coordinates

chrA09:-:7187038..7193898

Molecular Weight (calculated)

130479.0 Da

IEP (calculated)

5.680

GRAVY (calculated)

0.083

Length

1192 amino acids

Sequence
(BLAST)

0001: MATKLLSLTC IRKERFSGRY PVLWKNLNRP RGGGGGDGSP SETAVLKIDD EEAIASAVFR VIGMTCSACA GSIEKEIKRL PGIHEAVIDA LNNRAQIQFY
0101: PSSVNVETIR ETIEDAGFEA SLIENEANER SRQVCRIRIN GMTCTSCSST IESVLQSLHG VQRAHVALAI EEAEVHYDPT LLSCDKLLEE IDNAGFEAVL
0201: ISTGEDVSKI DLKIDGEFTD ESMMMIEKSL EALPGVQSVE ISHGSDKISV LYKPDVTGPR NFIRVIESTV FGHSGHIKAT VFSEGGVGRE SQKQEEIKQY
0301: YKSFLWSLVF TVPVFLTAMV FMYIPGIKHL LMYKVVNMLT VGEITRWLLA TPVQFIIGWR FYVGSYKALR RGSANMDVLI ALGTNAAYFY SLYTVLRAAT
0401: SPDFKGVDFF ETSAMLISFI ILGKYLEIMA KGKTSQAIAK LMNLAPDTAI LLAVDEEGNV TGEEEIDGRL IQKNDVIKIV PGAKVASDGY VIWGQSHVNE
0501: SMITGEARPV AKRKGDTVIG GTLNENGVLH VKVTRVGSES ALAQIVRLVE SAQLAKAPVQ KLADRISKFF VPLVIFLSFS TWLAWFLAGK LHWYPEAWIP
0601: SSMDSFELAL QFGISVMVIA CPCALGLATP TAVMVGTGVG ASQGVLIKGG QALERAHKVS CIVFDKTGTL TMGKPVVVKT KLLKNMVLRE FYELVAATEV
0701: NSEHPLAKAI VEYAKKFRDE EENPAWPEAR DFVSITGNGV RATVNGREIM VGNKNLMSSH KITITADAEE LLAEAEEMAQ TGILVSIDNE LTGVLAVSDP
0801: VKPSAREAIS ILKSMNIKSI MVTGDNWGTA NSIAREVGID SVIAEAKPEQ KAEKVKELQA AGHVVAMVGD GVNDSPALVA ADVGMAIGAG TDIAIEAADI
0901: VLMKSNLEDV ITAIDLSRKT FSRIRLNYVW ALGYNLMGIP IAAGVLFPST RFRLPPWIAG AAMAASSVSV VCCSLLLKNY KRPKRLDSLA IREMLRNGPR
1001: FGYVLVLGCV LFEDDALVYA SEAIFILSFI NRYISSSALE QDANGNSLEL SQYKDKVLLI VNVASKCGMT NSNYTELNEL YNKYKDKGLE ILAFPCNQFG
1101: EEEPGTTDQI TEFVCTKFKS EFPIFNKIEV NGENASPLYK FLKKGKWGIF GDEIQWNFAK FLVDKNGQAV ERYYPTTSPL TLEHDIKKLL NV

Best Arabidopsis Sequence Match ( AT1G63440.1 )
(BLAST)

001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV

Arabidopsis Description

HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.