Factsheet for GSMUA_Achr5P12290_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
plasma membrane 6
peroxisome 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plasma membrane
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P07500_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63440.1	GSMUA_Achr6P07500_001	AT1G66240.1	16367966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032161	Potato	cytosol, plasma membrane, vacuole	19.11	81.06
VIT_02s0025g03640.t01	Wine grape	golgi, peroxisome, plasma membrane	68.21	77.02
HORVU2Hr1G097010.1	Barley	plasma membrane	79.46	66.22
GSMUA_Achr5P12300_001	Banana	cytosol	78.21	54.96
GSMUA_Achr1P00300_001	Banana	cytosol	83.04	52.9
CDX91834	Canola	cytosol, peroxisome, plasma membrane	79.64	51.98
Solyc08g080870.2.1	Tomato	cytosol	80.71	47.38
KRH27938	Soybean	plasma membrane	23.57	46.48
AT1G63440.1	Thale cress	mitochondrion	82.32	46.33
Zm00001d002708_P001	Maize	mitochondrion	81.43	45.65
TraesCS2B01G429200.2	Wheat	mitochondrion	80.36	45.27
CDY50396	Canola	cytosol	78.57	45.22
EES11247	Sorghum	mitochondrion	80.89	45.21
Os04t0556000-01	Rice	plastid	80.36	44.91
TraesCS2D01G407800.5	Wheat	plastid	80.0	44.8
CDY49160	Canola	cytosol	77.68	44.71
TraesCS2A01G410400.3	Wheat	mitochondrion	80.36	44.51
KRH77529	Soybean	cytosol	77.32	44.32
Bra003110.1-P	Field mustard	cytosol	77.32	44.32
CDX93870	Canola	endoplasmic reticulum, plasma membrane	56.43	43.29
Zm00001d002705_P002	Maize	cytosol, plastid	78.93	42.66
CDY34353	Canola	mitochondrion	78.57	42.64
CDY25498	Canola	mitochondrion	78.57	42.55
KXG26864	Sorghum	cytosol, plasma membrane, plastid	79.82	41.31
Bra027641.1-P	Field mustard	mitochondrion	81.07	38.09
GSMUA_Achr3P11880_001	Banana	cytosol	58.04	35.91
GSMUA_Achr8P06970_001	Banana	cytosol	57.5	34.11
GSMUA_Achr5P26800_001	Banana	cytosol	54.64	32.69
GSMUA_Achr7P12640_001	Banana	cytosol	39.29	26.35
GSMUA_Achr8P30620_001	Banana	cytosol	36.25	25.25
VIT_02s0025g03630.t01	Wine grape	cytosol	83.04	24.02
GSMUA_Achr4P30180_001	Banana	plasma membrane	27.68	20.29
GSMUA_Achr5P22660_001	Banana	plasma membrane	27.68	18.97
GSMUA_Achr9P16140_001	Banana	plastid	26.07	16.96
GSMUA_Achr5P21940_001	Banana	extracellular, plasma membrane	27.68	16.58
GSMUA_Achr8P24660_001	Banana	cytosol	27.68	16.47

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf
InterPro:ATPase_P-typ_cyto_dom_N	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr5G12290_001	EnsemblPlants:GSMUA_Achr5P12290_001	EnsemblPlants:GSMUA_Achr5T12290_001	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:IPR023214	InterPro:IPR023299	UniProt:M0SXV8	PFAM:PF00122	PFAM:PF00702	PRINTS:PR00119
PRINTS:PR00943	ScanProsite:PS00154	PANTHER:PTHR24093	PANTHER:PTHR24093:SF417	InterPro:P_typ_ATPase	SUPFAM:SSF56784
SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TMHMM:TMhelix	UniParc:UPI0002968E8C	SEG:seg	:

Description

Putative copper-transporting ATPase 3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G12290_001]

Coordinates

chr5:+:8835000..8839791

Molecular Weight (calculated)

60341.1 Da

IEP (calculated)

8.029

GRAVY (calculated)

0.347

Length

560 amino acids

Sequence
(BLAST)

001: MDVLIALGTN AAYFYSIYTV LRAATSPNFM GTDFFETSSM LISFILLGKY LEVLAKGKTS EAIAKLMNLA PETAILISYD NEGNVISERE IDSRLIQKND
101: IIKRKGDIVI GGTVNENGVL HIRATHVGSE GALSQIVRLV ESAQMAKAPV QKFADRISKY FVPLVILLSL VTWLIWFLAG KFSSYPKSWI PSSMDSFQLA
201: LQFGISVMVI ACPCALGLAT PTAVMVGTGV GASQGVLIKG GQALESAHKV NCIVFDKTGT LTTGNPVVVN TRLLKNMVLR DFYEYVAAAE VNSEHPLAKA
301: IVQYAKKFST DEENPVWPEL QGFIAITGHG VKATVGNKER MAQTGIVVSI DREVTGIIAI SDPLKPGARE VISLLKCMKV KSIMVTGDNW GTANAIAQEV
401: GIDTVIAEAK PDQKSEKVKE LQMSGLTVAM VGDGINDSPA LVSADVGIAI GAGTDIAIEA ADIVLMKSNL EDVITAIDLS RKTFFRISMN YVWALGYNII
501: CIPVAAGVLF PFTRFRLPPW IAGAAMAASS VSVVCCSLLL KNYRRPKKLD MLRMSDVVVN

Best Arabidopsis Sequence Match ( AT1G63440.1 )
(BLAST)

001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV

Arabidopsis Description

HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.