Factsheet for Zm00001d002708_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d031132_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63440.1	Zm00001d031132_P002	AT1G66240.1	16367966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11247	Sorghum	mitochondrion	94.89	94.61
HORVU2Hr1G097010.1	Barley	plasma membrane	61.56	91.52
Os04t0556000-01	Rice	plastid	89.29	89.02
TraesCS2B01G429200.2	Wheat	mitochondrion	87.69	88.13
TraesCS2D01G407800.5	Wheat	plastid	87.39	87.3
TraesCS2A01G410400.3	Wheat	mitochondrion	87.19	86.15
Zm00001d002705_P002	Maize	cytosol, plastid	85.99	82.92
GSMUA_Achr5P12290_001	Banana	plasma membrane	45.65	81.43
PGSC0003DMT400032161	Potato	cytosol, plasma membrane, vacuole	10.41	78.79
VIT_02s0025g03640.t01	Wine grape	golgi, peroxisome, plasma membrane	37.94	76.41
Solyc08g080870.2.1	Tomato	cytosol	69.37	72.64
GSMUA_Achr5P12300_001	Banana	cytosol	56.56	70.89
CDX91834	Canola	cytosol, peroxisome, plasma membrane	59.66	69.46
KRH27938	Soybean	plasma membrane	19.42	68.31
AT1G63440.1	Thale cress	mitochondrion	67.97	68.24
KRH77529	Soybean	cytosol	64.66	66.12
CDY50396	Canola	cytosol	63.36	65.06
CDY49160	Canola	cytosol	62.76	64.44
Bra003110.1-P	Field mustard	cytosol	62.86	64.28
CDY34353	Canola	mitochondrion	66.37	64.24
GSMUA_Achr1P00300_001	Banana	cytosol	56.36	64.05
CDY25498	Canola	mitochondrion	66.17	63.93
CDX93870	Canola	endoplasmic reticulum, plasma membrane	45.55	62.33
Bra027641.1-P	Field mustard	mitochondrion	67.37	56.46
Zm00001d015829_P003	Maize	plasma membrane	55.16	56.22
Zm00001d027860_P001	Maize	plasma membrane	8.31	49.4
Zm00001d011553_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	9.01	49.18
Zm00001d053783_P001	Maize	plasma membrane	47.35	47.39
Zm00001d046953_P002	Maize	cytosol, endoplasmic reticulum, plasma membrane	44.64	43.13
VIT_02s0025g03630.t01	Wine grape	cytosol	70.67	36.47
Zm00001d027884_P003	Maize	plastid	25.73	28.49
Zm00001d052801_P004	Maize	plastid	26.63	27.48
Zm00001d005190_P001	Maize	plastid	21.52	23.94
Zm00001d014569_P002	Maize	plastid	18.72	22.72
Zm00001d005189_P001	Maize	plasma membrane	20.72	21.47
Zm00001d019226_P003	Maize	cytosol	16.32	18.25
Zm00001d014669_P007	Maize	plasma membrane	19.82	18.02

Protein Annotations

EntrezGene:103646092	Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000
UniProt:A0A1D6E3M8	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575
GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019829	GO:GO:0030001	GO:GO:0046872	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS	InterPro:IPR006121	InterPro:IPR023214
InterPro:IPR023299	ProteinID:ONM15147.1	InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00403	PFAM:PF00702
PRINTS:PR00119	PRINTS:PR00942	PRINTS:PR00943	ScanProsite:PS00154	ScanProsite:PS01047	PFscan:PS50846
PANTHER:PTHR24093	PANTHER:PTHR24093:SF417	InterPro:P_typ_ATPase	SUPFAM:SSF55008	SUPFAM:SSF56784	SUPFAM:SSF81653
SUPFAM:SSF81665	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI000221969A
EnsemblPlantsGene:Zm00001d002708	EnsemblPlants:Zm00001d002708_P001	EnsemblPlants:Zm00001d002708_T001	SEG:seg	:	:

Description

Probable copper-transporting ATPase HMA5

Coordinates

chr2:-:19911563..19919891

Molecular Weight (calculated)

108189.0 Da

IEP (calculated)

6.477

GRAVY (calculated)

0.149

Length

999 amino acids

Sequence
(BLAST)

001: MAASTRALFL SCFHGGGGAE VSRHLALRPR YPSNPRRPRS AVVAGEGGEG GGSGGDLEAA KGTADRDEEE KVSVFAVTGM TCAACAGSVE KAVKRLPGIH
101: DAAVDVLGGR AQVVFYPAFV SEGKIREAIE DVGFEAKLIN EEVRAKNILV CRFHIKGMTC TSCTNTVESA LQAFPGVQRA SVALATEEAE IHYDRRIVTA
201: SQLIHAVEET GFEAILITTG EDRSRIDLKL DGVLSERLTM ILKSSIQALP GVEDIKIDTE LHKVTVSYKP DQTGPRDLIE VIESATSGGV TASIYAEAGG
301: REHHRYGEIK RYRQSFLWSL IFTIPVFLTS MVFMYIPGLK DGLEKKVINM MSIGELLRWI LSTPVQFVIG RKFYTGAYKA ICHGSPNMDV LIALGTNTAY
401: FYSVYSVLRA ATSENYMSTD FFETSSMLIS FILLGKYLEI LAKGKTSEAI AKLMDLAPET ATLLMYDYEG NVVGEKEIDS RLIQKNDVIK VVPGGKVASD
501: GFVIWGQSHV NESMITGESR PVAKRKGDTV IGGTVNENGV LHVRATFVGS ETALAQIVRL VESAQMAKAP VQKFADQISR VFVPLVIVLS LLTWLVWFLA
601: GRFHGYPYSW IPSSMDSFQL ALQFGISVMV IACPCALGLA TPTAVMVATG VGASQGVLIK GGQALESAQK VNCIVFDKTG TLTVGKPVVV NTRLLKNMVL
701: REFFDYVAAA EDNSEHPLAK AIVEHAKKFY SEENHIWPEA RDFISVPGHG VRAKVCDRSV IVGNKSFMLS SSIDIPVEAS EILMEEEEKA QTGIIVAMDQ
801: EVVGIISVSD PIKPNAREVI SYLKSMNVES IMVTGDNWGT ANAIGKEVGI EKIIAEAKPE QKAEKVKELQ LLGKTVAMVG DGINDSPALV SANVGLAIGA
901: GTDVAIEAAD IVLMKSNLED VITAIDLSRK TFFRIRMNYV WALGYNVIGI PIAAGVLFPS TRFRLPPWVA GAAMAASSVS VVCWSLLLRY YKSPKKFDN

Best Arabidopsis Sequence Match ( AT1G63440.1 )
(BLAST)

001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV

Arabidopsis Description

HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.