Factsheet for Zm00001d053783_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d031132_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44790.1	Zm00001d031132_P002	AT1G66240.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06348	Sorghum	cytosol	95.99	96.09
Os02t0172600-00	Rice	cytosol	87.17	86.91
TraesCS6D01G146500.1	Wheat	cytosol	85.97	85.97
TraesCS6A01G156900.1	Wheat	cytosol	85.57	85.66
TraesCS6B01G184800.1	Wheat	cytosol	83.07	85.29
Zm00001d027860_P001	Maize	plasma membrane	13.83	82.14
Zm00001d011553_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	14.93	81.42
GSMUA_Achr8P06970_001	Banana	cytosol	73.75	77.97
GSMUA_Achr5P26800_001	Banana	cytosol	72.75	77.56
Zm00001d046953_P002	Maize	cytosol, endoplasmic reticulum, plasma membrane	78.96	76.21
CDY67984	Canola	cytosol, peroxisome, plasma membrane	17.23	70.2
VIT_01s0011g01360.t01	Wine grape	cytosol	70.04	69.9
KRH37212	Soybean	cytosol	69.04	69.88
HORVU6Hr1G031960.1	Barley	plastid	40.08	69.69
KRH12191	Soybean	cytosol	69.04	69.18
KRH58516	Soybean	cytosol	68.54	68.81
KRH42397	Soybean	cytosol	68.34	68.61
Solyc02g068490.2.1	Tomato	cytosol	68.34	68.0
PGSC0003DMT400024409	Potato	cytosol	68.24	67.96
AT5G44790.1	Thale cress	cytosol	67.94	67.73
CDY26408	Canola	golgi, nucleus, plasma membrane	11.72	67.63
CDY50771	Canola	cytosol	67.33	67.61
CDY39400	Canola	cytosol	67.33	67.27
Bra025102.1-P	Field mustard	cytosol	66.93	67.0
Bra027573.1-P	Field mustard	cytosol	65.13	64.87
CDY69037	Canola	cytosol	35.57	60.79
CDY67659	Canola	cytosol	35.67	59.83
Zm00001d002708_P001	Maize	mitochondrion	47.39	47.35
Zm00001d015829_P003	Maize	plasma membrane	45.99	46.84
Zm00001d002705_P002	Maize	cytosol, plastid	47.09	45.37
Zm00001d052801_P004	Maize	plastid	28.16	29.03
Zm00001d027884_P003	Maize	plastid	25.75	28.49
Zm00001d005190_P001	Maize	plastid	21.74	24.16
Zm00001d005189_P001	Maize	plasma membrane	22.04	22.82
Zm00001d014569_P002	Maize	plastid	17.74	21.51
Zm00001d014669_P007	Maize	plasma membrane	21.64	19.65
Zm00001d019226_P003	Maize	cytosol	16.63	18.59

Protein Annotations

EntrezGene:100501149	Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000
ProteinID:AQK60346.1	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	EMBL:BT084644
UniProt:C4J1E7	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019829	GO:GO:0030001	GO:GO:0046872	GO:GO:0099132
InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS
InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00403
PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00942	ScanProsite:PS00154	ScanProsite:PS01047	PFscan:PS50846
PANTHER:PTHR43520	PANTHER:PTHR43520:SF14	InterPro:P_typ_ATPase	SUPFAM:SSF55008	SUPFAM:SSF56784	SUPFAM:SSF81653
SUPFAM:SSF81665	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI0001A4C0E5
EnsemblPlantsGene:Zm00001d053783	EnsemblPlants:Zm00001d053783_P001	EnsemblPlants:Zm00001d053783_T001	SEG:seg	:	:

Description

Copper-transporting ATPase RAN1

Coordinates

chr4:+:240989903..240995095

Molecular Weight (calculated)

107273.0 Da

IEP (calculated)

5.474

GRAVY (calculated)

0.311

Length

998 amino acids

Sequence
(BLAST)

001: MAHLQLTALA GGADDEMEEV ALLGSYDEEA GVGPEAEGDR AEAGMRRVQV RVTGMTCSAC TGAVEAALSA RRGVRRAAVS LLQNRAHVVF DPALAKEDDI
101: VEAIEDAGFE AEILPDSTVS QPKPHKTLSG QFRIGGMTCA ACVNSVEGIL KKLPGVKGAV VALATSLGEV EYDPSAISKD EIVQAIEDAG FDAALLQSSD
201: QDKVLLNVQG LHFEEDVDVL HDILKKMEGL RQFGVNFANS EVDIVFDPEV VGLRQIVDTI ETESNNRLKA HVQDPYIRAA SNDAQEASKT LHLLRFSLFL
301: SIPVFFIRMV CPRIPLISSF LLMHFGPFRI GDLLRWILVT MVQFIVGKRF YVAAYRALRH GSTNMDVLVV IGTTASYVYS VCALLYGAFT GFHPPIYFET
401: SAMIITFVLF GKYLEVLAKG KTSDAIKKLV ELAPATAILL LKDKEGKYSG EKEIDASLVQ PGDVLKVLPG SKVPADGIVI WGTSHVNESM VTGESVPISK
501: EVSSLVIGGT MNLHGVLHIQ ATKVGSGTVL SQIISLVETA QMSKAPIQKF ADYVASIFVP IVITLSFLTF LAWFLCGWLG AYPNSWSAES SNCFVFSLMF
601: SISVVVIACP CALGLATPTA VMVATGVGAS HGVLVKGGDA LERAQNVKYV IFDKTGTLTQ GKATVTATKI FSGMDLGDFL TLVASAEASS EHPLAKAILD
701: YAFHFHFFGN LPSGKDSIKR RKEEILSQWL LEVVDFAALP GKGIQCWING KKVLVGNRAL ITENGVNIPE EAERFLVDME LNAKTGILVA YDGDFIGLVG
801: ITDPLKREAA VVIQGLKKMG VHPVMVTGDN WRTARAVAKE VGIDDVRAEV MPAGKADVIH SLQKDGSVVA MVGDGINDSP ALAAADVGMA IGAGTDIAIE
901: AADYVLVRNN LEDVITAIDL SRKTFIRIRW NYFFAMAYNV IAIPVAAGAL FPFTGVQMPP WLAGACMAFS SVSVVSSSLL LRRYRKPRLT TVLQITVE

Best Arabidopsis Sequence Match ( AT5G44790.1 )
(BLAST)

0001: MAPSRRDLQL TPVTGGSSSQ ISDMEEVGLL DSYHNEANAD DILTKIEEGR DVSGLRKIQV GVTGMTCAAC SNSVEAALMN VNGVFKASVA LLQNRADVVF
0101: DPNLVKEEDI KEAIEDAGFE AEILAEEQTQ ATLVGQFTIG GMTCAACVNS VEGILRDLPG VKRAVVALST SLGEVEYDPN VINKDDIVNA IEDAGFEGSL
0201: VQSNQQDKLV LRVDGILNEL DAQVLEGILT RLNGVRQFRL DRISGELEVV FDPEVVSSRS LVDGIEEDGF GKFKLRVMSP YERLSSKDTG EASNMFRRFI
0301: SSLVLSIPLF FIQVICPHIA LFDALLVWRC GPFMMGDWLK WALVSVIQFV IGKRFYVAAW RALRNGSTNM DVLVALGTSA SYFYSVGALL YGAVTGFWSP
0401: TYFDASAMLI TFVLLGKYLE SLAKGKTSDA MKKLVQLTPA TAILLTEGKG GKLVGEREID ALLIQPGDTL KVHPGAKIPA DGVVVWGSSY VNESMVTGES
0501: VPVSKEVDSP VIGGTINMHG ALHMKATKVG SDAVLSQIIS LVETAQMSKA PIQKFADYVA SIFVPVVITL ALFTLVGWSI GGAVGAYPDE WLPENGTHFV
0601: FSLMFSISVV VIACPCALGL ATPTAVMVAT GVGATNGVLI KGGDALEKAH KVKYVIFDKT GTLTQGKATV TTTKVFSEMD RGEFLTLVAS AEASSEHPLA
0701: KAIVAYARHF HFFDESTEDG ETNNKDLQNS GWLLDTSDFS ALPGKGIQCL VNEKMILVGN RKLMSENAIN IPDHVEKFVE DLEESGKTGV IVAYNGKLVG
0801: VMGIADPLKR EAALVVEGLL RMGVRPIMVT GDNWRTARAV AKEVGIEDVR AEVMPAGKAD VIRSLQKDGS TVAMVGDGIN DSPALAAADV GMAIGAGTDV
0901: AIEAADYVLM RNNLEDVITA IDLSRKTLTR IRLNYVFAMA YNVVSIPIAA GVFFPVLRVQ LPPWAAGACM ALSSVSVVCS SLLLRRYKKP RLTTVLKITT
1001: E

Arabidopsis Description

RAN1Copper-transporting ATPase RAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.