Factsheet for VIT_01s0011g01360.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0074g00770.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44790.1	VIT_13s0074g00770.t01	AT3G56240.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58516	Soybean	cytosol	79.4	79.88
KRH12191	Soybean	cytosol	79.1	79.42
KRH37212	Soybean	cytosol	78.3	79.41
Solyc02g068490.2.1	Tomato	cytosol	79.6	79.36
PGSC0003DMT400024409	Potato	cytosol	79.5	79.34
KRH42397	Soybean	cytosol	78.6	79.07
CDY50771	Canola	cytosol	77.3	77.77
CDY39400	Canola	cytosol	77.6	77.68
Bra025102.1-P	Field mustard	cytosol	77.1	77.33
AT5G44790.1	Thale cress	cytosol	76.5	76.42
GSMUA_Achr8P06970_001	Banana	cytosol	69.5	73.62
Bra027573.1-P	Field mustard	cytosol	73.1	72.95
GSMUA_Achr5P26800_001	Banana	cytosol	68.1	72.76
Os06t0665800-01	Rice	cytosol	71.1	70.89
EES06348	Sorghum	cytosol	70.5	70.71
Os02t0172600-00	Rice	cytosol	70.6	70.53
TraesCS6A01G156900.1	Wheat	cytosol	70.3	70.51
CDY69037	Canola	cytosol	41.1	70.38
TraesCS6D01G146500.1	Wheat	cytosol	70.1	70.24
Zm00001d053783_P001	Maize	plasma membrane	69.9	70.04
TraesCS7D01G467100.1	Wheat	cytosol	70.1	70.03
TraesCS7A01G480100.1	Wheat	cytosol	70.0	69.93
TraesCS6B01G184800.1	Wheat	cytosol	67.9	69.86
TraesCS7B01G382300.1	Wheat	cytosol	69.7	69.63
KXG20553	Sorghum	plasma membrane	70.0	69.51
Zm00001d027860_P001	Maize	plasma membrane	11.6	69.05
CDY67659	Canola	cytosol	41.0	68.91
Zm00001d011553_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	12.4	67.76
HORVU7Hr1G108890.1	Barley	cytosol, mitochondrion	67.2	65.69
Zm00001d046953_P002	Maize	cytosol, endoplasmic reticulum, plasma membrane	64.9	62.77
VIT_02s0025g03640.t01	Wine grape	golgi, peroxisome, plasma membrane	28.2	56.85
HORVU6Hr1G031960.1	Barley	plastid	30.4	52.96
VIT_06s0004g01890.t01	Wine grape	plasma membrane	46.6	47.75
VIT_12s0142g00330.t01	Wine grape	golgi, plasma membrane	15.6	35.21
VIT_12s0142g00400.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	8.7	31.75
VIT_04s0008g01960.t01	Wine grape	plastid	26.6	29.95
VIT_11s0103g00370.t01	Wine grape	plasma membrane	21.4	29.8
VIT_02s0025g03630.t01	Wine grape	cytosol	48.7	25.16
VIT_07s0129g01040.t01	Wine grape	plastid	18.5	22.32

Protein Annotations

EntrezGene:100266338	wikigene:100266338	Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10
Gene3D:3.40.50.1000	UniProt:A5B663	EMBL:AM447947	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N
InterPro:ATPase_P-typ_transduc_dom_A_sf	ProteinID:CAN69730	ProteinID:CAN69730.1	ProteinID:CCB51027	ProteinID:CCB51027.1	EMBL:FN595752
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794
GO:GO:0005802	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0009719	GO:GO:0009723
GO:GO:0009987	GO:GO:0010119	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829
GO:GO:0030001	GO:GO:0046872	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd
InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299
EntrezGene:LOC100266338	wikigene:LOC100266338	InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00403	PFAM:PF00702
PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154	ScanProsite:PS01047	PFscan:PS50846	PANTHER:PTHR43520
PANTHER:PTHR43520:SF14	InterPro:P_typ_ATPase	SUPFAM:SSF55008	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665
TIGR:TC64839	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI000152031A
ArrayExpress:VIT_01s0011g01360	EnsemblPlantsGene:VIT_01s0011g01360	EnsemblPlants:VIT_01s0011g01360.t01	unigene:Vvi.16528	RefSeq:XP_002276004	RefSeq:XP_002276004.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:1169749..1177375

Molecular Weight (calculated)

107056.0 Da

IEP (calculated)

4.957

GRAVY (calculated)

0.305

Length

1000 amino acids

Sequence
(BLAST)

001: MAPSFGGLQL TPFSSGGRKT LPDDDAGDLE DVRLLDAYKE DDSGLEEGMR GIQVRVTGMT CAACSNSVEG ALRDVNGVLR ASVALLQNRA DVVFDPKLVG
101: EEDIKNAIED AGFDAEIMSE PSRTKPHGTL LGQFTIGGMT CAVCVNSVEG ILRKLPGVKR AVVALATSLG EVEYDPTIIS KDDIVNAIED AGFEASFVQS
201: SEQDKIILGV TGISNEMDAL ILEGILTSIR GVRQFLFDRT LGELEVLFDP EVISSRSLVD GIEGGSNAKF KLHVKNPYTR MTSKDLEESS NMFRLFTSSL
301: FLSIPVFLIR VVCPHIPLVD SLLLLRCGPF LMGDWLKWAL VSLVQFVIGK RFYIAAGRAL RNGSANMDVL VALGTSASYF YSVCALLYGA VTGFWSPTYF
401: EASAMLITFV LLGKYLESLA KGKTSDAIKK LVELAPATAL LLVKDKGGRF IEEQEIDAML IQPGDVLKVL PGTKVPADGI VMWGSSYVNE SMVTGESAPV
501: SKEVNSPVIG GTMNLYGALH IQATKVGSNA VLSQIISLVE TAQMSKAPIQ KFADFVASIF VPTVVAMSLL TLLGWYVSGT LGAYPKQWLP ENGNYFVFAL
601: MFAISVVVIA CPCALGLATP TAVMVATGVG ANNGVLIKGG DALERAQKVK YVVFDKTGTL TQGKATVTTA KVFTGMDHGE FLTLVASAEA SSEHPLAVAI
701: VEYARHFHFF EEPSTTKDAQ DHSRETRFSG WLLDVSEFSA LPGRGVQCFI KGKRVLVGNR KLLTESGVTI PTDVENFLVN LEESAKTGVL VAYDDTAVGV
801: LGVADPLKRE AAVVVEGLLK MGVIPVMVTG DNWRTARAVA KEVGIQDVRA EVMPAGKAEV IHSFQKDGSI VAMVGDGIND SPALAAADVG MAIGAGTDIA
901: IEAADYVLMR SNLEDVITAI DLSRKTFSRI RLNYVFAMAY NVIAIPIAAG VFFPWLGIKL PPWAAGACMA LSSVSVVCSS LLLRRYKKPR LTTILEITVE

Best Arabidopsis Sequence Match ( AT5G44790.1 )
(BLAST)

0001: MAPSRRDLQL TPVTGGSSSQ ISDMEEVGLL DSYHNEANAD DILTKIEEGR DVSGLRKIQV GVTGMTCAAC SNSVEAALMN VNGVFKASVA LLQNRADVVF
0101: DPNLVKEEDI KEAIEDAGFE AEILAEEQTQ ATLVGQFTIG GMTCAACVNS VEGILRDLPG VKRAVVALST SLGEVEYDPN VINKDDIVNA IEDAGFEGSL
0201: VQSNQQDKLV LRVDGILNEL DAQVLEGILT RLNGVRQFRL DRISGELEVV FDPEVVSSRS LVDGIEEDGF GKFKLRVMSP YERLSSKDTG EASNMFRRFI
0301: SSLVLSIPLF FIQVICPHIA LFDALLVWRC GPFMMGDWLK WALVSVIQFV IGKRFYVAAW RALRNGSTNM DVLVALGTSA SYFYSVGALL YGAVTGFWSP
0401: TYFDASAMLI TFVLLGKYLE SLAKGKTSDA MKKLVQLTPA TAILLTEGKG GKLVGEREID ALLIQPGDTL KVHPGAKIPA DGVVVWGSSY VNESMVTGES
0501: VPVSKEVDSP VIGGTINMHG ALHMKATKVG SDAVLSQIIS LVETAQMSKA PIQKFADYVA SIFVPVVITL ALFTLVGWSI GGAVGAYPDE WLPENGTHFV
0601: FSLMFSISVV VIACPCALGL ATPTAVMVAT GVGATNGVLI KGGDALEKAH KVKYVIFDKT GTLTQGKATV TTTKVFSEMD RGEFLTLVAS AEASSEHPLA
0701: KAIVAYARHF HFFDESTEDG ETNNKDLQNS GWLLDTSDFS ALPGKGIQCL VNEKMILVGN RKLMSENAIN IPDHVEKFVE DLEESGKTGV IVAYNGKLVG
0801: VMGIADPLKR EAALVVEGLL RMGVRPIMVT GDNWRTARAV AKEVGIEDVR AEVMPAGKAD VIRSLQKDGS TVAMVGDGIN DSPALAAADV GMAIGAGTDV
0901: AIEAADYVLM RNNLEDVITA IDLSRKTLTR IRLNYVFAMA YNVVSIPIAA GVFFPVLRVQ LPPWAAGACM ALSSVSVVCS SLLLRRYKKP RLTTVLKITT
1001: E

Arabidopsis Description

RAN1Copper-transporting ATPase RAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.