Factsheet for VIT_04s0008g01960.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P30620_001	Banana	cytosol	65.32	72.14
KRH52252	Soybean	plastid	73.2	71.98
Solyc08g061610.2.1	Tomato	plastid	71.85	71.36
AT5G21930.1	Thale cress	plastid	70.5	70.89
Bra002374.1-P	Field mustard	plastid	70.61	70.85
CDX92394	Canola	plastid	70.61	70.85
CDY16605	Canola	plastid	70.27	70.51
KRH61581	Soybean	plastid	39.08	68.71
TraesCS4B01G293600.3	Wheat	mitochondrion, plasma membrane	56.31	68.12
HORVU0Hr1G009080.5	Barley	mitochondrion, plasma membrane	56.19	65.57
HORVU4Hr1G076330.4	Barley	golgi, mitochondrion	45.16	64.57
KXG40056	Sorghum	plastid	64.3	63.44
TraesCS4D01G292300.2	Wheat	plastid	62.84	62.77
Os03t0178100-00	Rice	plastid	63.74	62.75
Zm00001d027884_P003	Maize	plastid	63.63	62.64
TraesCS4A01G010800.1	Wheat	mitochondrion	62.73	62.58
VIT_12s0142g00400.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	14.64	47.45
VIT_12s0142g00330.t01	Wine grape	golgi, plasma membrane	20.83	41.76
VIT_02s0025g03640.t01	Wine grape	golgi, peroxisome, plasma membrane	21.06	37.7
VIT_06s0004g01890.t01	Wine grape	plasma membrane	30.41	27.66
VIT_01s0011g01360.t01	Wine grape	cytosol	29.95	26.6
VIT_11s0103g00370.t01	Wine grape	plasma membrane	20.05	24.79
VIT_07s0129g01040.t01	Wine grape	plastid	20.83	22.32
VIT_02s0025g03630.t01	Wine grape	cytosol	30.07	13.79

Protein Annotations

EntrezGene:100264462	wikigene:100264462	Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10
Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	ProteinID:CBI20726
ProteinID:CBI20726.3	UniProt:D7STX7	EMBL:FN595231	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005375	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006812	GO:GO:0006825	GO:GO:0008150	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829
GO:GO:0030001	GO:GO:0046872	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	EntrezGene:LOC100264462	wikigene:LOC100264462
InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119	ScanProsite:PS00154
PFscan:PS50846	PANTHER:PTHR43520	PANTHER:PTHR43520:SF10	InterPro:P_typ_ATPase	SUPFAM:SSF55008	SUPFAM:SSF56784
SUPFAM:SSF81653	SUPFAM:SSF81660	SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix
UniParc:UPI0001BE1B92	ArrayExpress:VIT_04s0008g01960	EnsemblPlantsGene:VIT_04s0008g01960	EnsemblPlants:VIT_04s0008g01960.t01	unigene:Vvi.5694	RefSeq:XP_002280050
RefSeq:XP_002280050.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:1557780..1570517

Molecular Weight (calculated)

94821.4 Da

IEP (calculated)

6.658

GRAVY (calculated)

0.161

Length

888 amino acids

Sequence
(BLAST)

001: MTSDLLRISL YPPRNLCFSY DSKSNVHGFS FSSLPQRRRS QRLWKVSGRR APNFNFIFSK AIDIRAPVKS TPLTEEQRPR GDSPLLLDVT GMVCGACVAR
101: VKSVLSADER VESAVVNMLT ETAAVRIRPE VVEETVGESL ARRLTECGFP TKERVSGTGV EENVKKWREM GEKKEALLVK SRNRVAVAWT LVALCCGSHA
201: SHILHSLGIH VDHGSFWELL HNSYVKGGLA LGALLGPGRE LLFDGLRAFS KGSPNMNSLV GFGSVAAFGI SMVSLFNPGL QWDASFFDEP VMLLGFVLLG
301: RSLEEKARIR ASSDMNKLLS LISTRSRLVI TSSESDSSTN SILCSDAMCI EVPTDDIRVG DSVLVLPGET IPVDGRVLAG RSVVDESMLT GESLPVFKEE
401: GFVVSAGTIN WGGPLRIEAS SNGSNSTISK IVSMVEDAQG RAAPIQRLAD SIAGPFVYIV MTLSAATFTF WYYLGTHIFP DVLFNDIAGP DGNPLLLSLK
501: LSVDVLVVSC PCALGLATPT AILVGTSLGA KQGLLIRGGD VLERLASVDH VAFDKTGTLT KGKPAVSAVA SLAYEEQEIL RIAAAVEKTA VHPIAKAIVN
601: KAESLNLTIP ITTAQLVEPG FGSLAEVDGR LVAVGSLEWV QDRFQRRTNH SDLMNLENAM MHHLSNEVSL SNHSRTVVYV GREGDGVIGA IAVCDSLRHD
701: ANSAVTRLQE KGIKTILLSG DREEAVATIA KTVGIESEFI NSSLTPQQKS GVIKSLQTAG HRVAMVGDGI NDAPSLALAD VGIALQVESQ QSAASDAASI
801: ILLGNKISQV ADALDLAQAT MAKVYQNLSW AVAYNVVAVP IAAGVLLPRF DLAMTPSLAG GLMALSSIFV VTNSVLLQLH GSDKNRKS

Best Arabidopsis Sequence Match ( AT5G21930.1 )
(BLAST)

001: MASNLLRFPL PPPSSLHIRP SKFLVNRCFP RLRRSRIRRH CSRPFFLVSN SVEISTQSFE STESSIESVK SITSDTPILL DVSGMMCGGC VARVKSVLMS
101: DDRVASAVVN MLTETAAVKF KPEVEVTADT AESLAKRLTE SGFEAKRRVS GMGVAENVKK WKEMVSKKED LLVKSRNRVA FAWTLVALCC GSHTSHILHS
201: LGIHIAHGGI WDLLHNSYVK GGLAVGALLG PGRELLFDGI KAFGKRSPNM NSLVGLGSMA AFSISLISLV NPELEWDASF FDEPVMLLGF VLLGRSLEER
301: AKLQASTDMN ELLSLISTQS RLVITSSDNN TPVDSVLSSD SICINVSVDD IRVGDSLLVL PGETFPVDGS VLAGRSVVDE SMLTGESLPV FKEEGCSVSA
401: GTINWDGPLR IKASSTGSNS TISKIVRMVE DAQGNAAPVQ RLADAIAGPF VYTIMSLSAM TFAFWYYVGS HIFPDVLLND IAGPDGDALA LSLKLAVDVL
501: VVSCPCALGL ATPTAILIGT SLGAKRGYLI RGGDVLERLA SIDCVALDKT GTLTEGRPVV SGVASLGYEE QEVLKMAAAV EKTATHPIAK AIVNEAESLN
601: LKTPETRGQL TEPGFGTLAE IDGRFVAVGS LEWVSDRFLK KNDSSDMVKL ESLLDHKLSN TSSTSRYSKT VVYVGREGEG IIGAIAISDC LRQDAEFTVA
701: RLQEKGIKTV LLSGDREGAV ATVAKNVGIK SESTNYSLSP EKKFEFISNL QSSGHRVAMV GDGINDAPSL AQADVGIALK IEAQENAASN AASVILVRNK
801: LSHVVDALSL AQATMSKVYQ NLAWAIAYNV ISIPIAAGVL LPQYDFAMTP SLSGGLMALS SIFVVSNSLL LQLHKSETSK NSL

Arabidopsis Description

PAA2Copper-transporting ATPase PAA2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.