Factsheet for VIT_02s0025g03640.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

cytosol 1
plasma membrane 3
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032161	Potato	cytosol, plasma membrane, vacuole	23.79	89.39
KRH59857	Soybean	cytosol	38.51	77.96
GSMUA_Achr5P12290_001	Banana	plasma membrane	77.02	68.21
KRH41158	Soybean	plasma membrane	86.69	63.42
HORVU2Hr1G097010.1	Barley	plasma membrane	74.8	55.21
GSMUA_Achr5P12300_001	Banana	cytosol	74.6	46.42
CDX91834	Canola	cytosol, peroxisome, plasma membrane	80.24	46.39
KRG95266	Soybean	cytosol	86.49	43.6
Solyc08g080870.2.1	Tomato	cytosol	82.86	43.08
GSMUA_Achr1P00300_001	Banana	cytosol	76.21	43.0
AT1G63440.1	Thale cress	mitochondrion	84.48	42.11
CDY50396	Canola	cytosol	79.03	40.29
CDY25498	Canola	mitochondrion	83.27	39.94
CDY34353	Canola	mitochondrion	83.06	39.92
CDY49160	Canola	cytosol	78.23	39.88
Bra003110.1-P	Field mustard	cytosol	78.23	39.71
KRH77528	Soybean	mitochondrion	67.94	38.96
CDX93870	Canola	endoplasmic reticulum, plasma membrane	57.26	38.9
Zm00001d002708_P001	Maize	mitochondrion	76.41	37.94
TraesCS2B01G429200.2	Wheat	mitochondrion	75.6	37.73
TraesCS2D01G407800.5	Wheat	plastid	75.81	37.6
EES11247	Sorghum	mitochondrion	75.81	37.52
Os04t0556000-01	Rice	plastid	75.4	37.33
TraesCS2A01G410400.3	Wheat	mitochondrion	75.4	36.99
VIT_12s0142g00330.t01	Wine grape	golgi, plasma membrane	32.46	36.34
Zm00001d002705_P002	Maize	cytosol, plastid	75.0	35.91
Bra027641.1-P	Field mustard	mitochondrion	83.27	34.65
KXG26864	Sorghum	cytosol, plasma membrane, plastid	74.19	34.01
VIT_06s0004g01890.t01	Wine grape	plasma membrane	62.7	31.86
VIT_01s0011g01360.t01	Wine grape	cytosol	56.85	28.2
VIT_02s0025g03630.t01	Wine grape	cytosol	91.94	23.55
VIT_04s0008g01960.t01	Wine grape	plastid	37.7	21.06
VIT_11s0103g00370.t01	Wine grape	plasma membrane	29.84	20.61
VIT_07s0129g01040.t01	Wine grape	plastid	28.83	17.25
VIT_12s0142g00400.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	6.45	11.68

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf
InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	ProteinID:CCB58357	ProteinID:CCB58357.1	UniProt:F6HUD4	EMBL:FN596251
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005388	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829
GO:GO:0043231	GO:GO:0070588	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214
InterPro:IPR023299	InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120
ScanProsite:PS00154	PANTHER:PTHR24093	PANTHER:PTHR24093:SF417	InterPro:P_typ_ATPase	SUPFAM:SSF56784	SUPFAM:SSF81653
SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI0002108076	ArrayExpress:VIT_02s0025g03640
EnsemblPlantsGene:VIT_02s0025g03640	EnsemblPlants:VIT_02s0025g03640.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:3181542..3183781

Molecular Weight (calculated)

52778.5 Da

IEP (calculated)

5.380

GRAVY (calculated)

0.269

Length

496 amino acids

Sequence
(BLAST)

001: MITGEARPVA KRKGDTVIGG TVNEDGVLHV EATQVGSESA LSQIVQLVES AQMAKAPVQK FADRISKYFV PLVIILSFST WLSWFLAGKF HRYPKSWIPS
101: SMDSFELALQ FGISVMVIAC PCALGLATPT AVMVGTGVGA SQGVLIKGGQ ALESAHKVNC IVFDKTGTLT VGKPVVVNTR LLKNMALQEF YELVAATEVN
201: SEHPLAKAIV EYAKKFREDE ENPTWPEAKD FVSITGNGVK AIVRNKEIIV GNKSLMLDQN IAIPFEAEDM LAETEAMAQT GILISIEGEL AGVLAISDPL
301: KPGARDVISI LKSMKVKSII VTGDNWGTAN SIAKEVGIET VIAEAKPEQK AEKVKDLQAS GNIVAMVGDG INDSPALAAA DVGMAIGAGT DIAIEAADIV
401: LMKSNLEDVI TAIDLSRKTF SRIRLNYIWA LGYNLLGIPI AAGALFPSIG LRLPPWIAGA AMAASSVSVV CCSLLLKNYR RPKKLDGLEM QGVTVE

Best Arabidopsis Sequence Match ( AT1G63440.1 )
(BLAST)

001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV

Arabidopsis Description

HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.