Factsheet for GSMUA_Achr5P12300_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P07500_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63440.1	GSMUA_Achr6P07500_001	AT1G66240.1	16367966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032161	Potato	cytosol, plasma membrane, vacuole	14.05	84.85
GSMUA_Achr5P12290_001	Banana	plasma membrane	54.96	78.21
VIT_02s0025g03640.t01	Wine grape	golgi, peroxisome, plasma membrane	46.42	74.6
GSMUA_Achr1P00300_001	Banana	cytosol	73.9	67.01
HORVU2Hr1G097010.1	Barley	plasma membrane	51.94	61.61
Solyc08g080870.2.1	Tomato	cytosol	69.26	57.86
CDX91834	Canola	cytosol, peroxisome, plasma membrane	61.1	56.76
Zm00001d002708_P001	Maize	mitochondrion	70.89	56.56
TraesCS2B01G429200.2	Wheat	mitochondrion	70.01	56.14
TraesCS2D01G407800.5	Wheat	plastid	70.01	55.8
TraesCS2A01G410400.3	Wheat	mitochondrion	70.39	55.49
EES11247	Sorghum	mitochondrion	69.76	55.49
AT1G63440.1	Thale cress	mitochondrion	69.26	55.48
Os04t0556000-01	Rice	plastid	69.39	55.19
KRH77529	Soybean	cytosol	65.24	53.22
CDY34353	Canola	mitochondrion	67.63	52.23
CDY25498	Canola	mitochondrion	67.63	52.13
CDY50396	Canola	cytosol	63.36	51.9
Zm00001d002705_P002	Maize	cytosol, plastid	67.25	51.74
CDY49160	Canola	cytosol	63.11	51.7
Bra003110.1-P	Field mustard	cytosol	63.11	51.48
KXG26864	Sorghum	cytosol, plasma membrane, plastid	68.13	50.18
CDX93870	Canola	endoplasmic reticulum, plasma membrane	42.28	46.16
Bra027641.1-P	Field mustard	mitochondrion	67.63	45.22
GSMUA_Achr3P11880_001	Banana	cytosol	48.68	42.87
GSMUA_Achr8P06970_001	Banana	cytosol	47.8	40.36
KRH27938	Soybean	plasma membrane	14.18	39.79
GSMUA_Achr5P26800_001	Banana	cytosol	44.79	38.14
VIT_02s0025g03630.t01	Wine grape	cytosol	71.64	29.49
GSMUA_Achr7P12640_001	Banana	cytosol	28.73	27.43
GSMUA_Achr8P30620_001	Banana	cytosol	25.72	25.5
GSMUA_Achr4P30180_001	Banana	plasma membrane	20.2	21.07
GSMUA_Achr5P22660_001	Banana	plasma membrane	19.95	19.46
GSMUA_Achr5P21940_001	Banana	extracellular, plasma membrane	20.33	17.33
GSMUA_Achr8P24660_001	Banana	cytosol	20.45	17.32
GSMUA_Achr9P16140_001	Banana	plastid	18.57	17.19

Protein Annotations

Gene3D:1.20.1110.10	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001
GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr5G12300_001	EnsemblPlants:GSMUA_Achr5P12300_001	EnsemblPlants:GSMUA_Achr5T12300_001	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS	InterPro:IPR006121	InterPro:IPR023214
InterPro:IPR023299	UniProt:M0SXV9	PFAM:PF00122	PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119
PRINTS:PR00942	ScanProsite:PS00154	ScanProsite:PS01047	PFscan:PS50846	PANTHER:PTHR43520	InterPro:P_typ_ATPase
SUPFAM:SSF55008	SUPFAM:SSF56784	SUPFAM:SSF81665	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TMHMM:TMhelix
UniParc:UPI0002949501	SEG:seg	:	:	:	:

Description

Putative copper-transporting ATPase 3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G12300_001]

Coordinates

chr5:+:8841882..8848253

Molecular Weight (calculated)

86248.3 Da

IEP (calculated)

6.636

GRAVY (calculated)

0.330

Length

797 amino acids

Sequence
(BLAST)

001: MTCAACAGSV EKAIKRLPGI HDAAVDVLND RAQVVFYPAF VSEDTIRETI EDVGFEATSV KELMKENSTL LCRLQIKGMT CTSCTNTVES ALQAVNGVHK
101: ALVALATEEA EICYDPRFAS ANQLIEAVED SGFEATLITT GVDDINIDPV LRKVTVSYKP DQTGPRNFIE VIESTGSGHL KASIYPEAGG KELHKELLRW
201: ILCTPVQFVI GRRFYIGSYK ALQHGSANMD VLIALGTNAA YFYSLYSYLE ILAKGKTSEA IATLMNLTPE TAILLSYGNE GNVVSDAVIG GTIVRLVESA
301: QMAKAPVQKF ADRISKYFVP LMITLNRVKC LMVILLAFFT WLIWFLAGKF NSYPKSWIPS SMDSFQLALQ FGISVMVIAC PCALGLATPT AVMVGTGVGA
401: SQGVLIKGGQ ALESAHKVCS INIFPILSAS VNRFQHITIV NCVVFDKTGT LTTGKPVVVS TRLLKNMVLR DFYEYVAAAE AVSCCWISVG CLSNISPIRR
501: VNSEHPLAKA IVQYAKNFST DEENHIWPEA RDFTAIAGHG VKASVANKEI ILAETEGMAQ TGIIVSINQE LTGIIAISDP LKPGAPDVIS LLKSMKVKSI
601: MVTGDNWGTA NAIAQEVGID TVIAEAKPDQ KAEKVKELQV LFHVIHSLAY YESTVTILLR FFTFVAMVGD GINDSPALVS ADVGMAIGAG TDIAIEAADI
701: VLMKSNLEDV ITAIDLSRKT FNRIRMNYIW ALGYNIIGIP IAAGVLFPFT RFRLPPWIAG AAMAASSVSV VCCSLLLKNY KRPKKLDALR MSEVVVN

Best Arabidopsis Sequence Match ( AT1G63440.1 )
(BLAST)

001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV

Arabidopsis Description

HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.