CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 2
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES17440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63440.1	EES17440	AT1G66240.1	16367966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002705_P002	Maize	cytosol, plastid	87.06	90.93
HORVU2Hr1G097010.1	Barley	plasma membrane	55.36	89.14
Os04t0556000-01	Rice	plastid	79.85	86.23
EES11247	Sorghum	mitochondrion	79.85	86.23
TraesCS2B01G429200.2	Wheat	mitochondrion	78.47	85.41
TraesCS2D01G407800.5	Wheat	plastid	77.91	84.3
TraesCS2A01G410400.3	Wheat	mitochondrion	77.82	83.28
GSMUA_Achr5P12290_001	Banana	plasma membrane	41.31	79.82
PGSC0003DMT400032161	Potato	cytosol, plasma membrane, vacuole	9.52	78.03
VIT_02s0025g03640.t01	Wine grape	golgi, peroxisome, plasma membrane	34.01	74.19
Solyc08g080870.2.1	Tomato	cytosol	61.74	70.02
CDX91834	Canola	cytosol, peroxisome, plasma membrane	54.25	68.41
GSMUA_Achr5P12300_001	Banana	cytosol	50.18	68.13
KRH27938	Soybean	plasma membrane	17.84	67.96
AT1G63440.1	Thale cress	mitochondrion	60.81	66.13
KRH77529	Soybean	cytosol	58.23	64.48
CDY50396	Canola	cytosol	57.95	64.44
CDY49160	Canola	cytosol	57.12	63.51
Bra003110.1-P	Field mustard	cytosol	57.21	63.36
GSMUA_Achr1P00300_001	Banana	cytosol	51.02	62.8
CDY25498	Canola	mitochondrion	59.7	62.48
CDY34353	Canola	mitochondrion	59.52	62.4
CDX93870	Canola	endoplasmic reticulum, plasma membrane	41.04	60.82
EES04697	Sorghum	cytosol, plastid	50.28	55.85
Bra027641.1-P	Field mustard	mitochondrion	60.72	55.12
KXG20553	Sorghum	plasma membrane	43.53	46.77
EES06348	Sorghum	cytosol	43.07	46.74
VIT_02s0025g03630.t01	Wine grape	cytosol	63.59	35.54
OQU81022	Sorghum	cytosol	24.21	33.29
KXG40056	Sorghum	plastid	23.84	28.67
EER96099	Sorghum	cytosol	19.04	23.02
EER96100	Sorghum	cytosol	18.85	21.86
KXG20697	Sorghum	plastid	16.73	21.86
EER90320	Sorghum	plasma membrane	18.48	18.71

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	UniProt:A0A1B6PMG1
InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829
GO:GO:0030001	GO:GO:0046872	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd
InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299
EnsemblPlants:KXG26864	ProteinID:KXG26864	ProteinID:KXG26864.1	InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00403
PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00942	PRINTS:PR00943	ScanProsite:PS00154	ScanProsite:PS01047
PFscan:PS50846	PANTHER:PTHR24093	PANTHER:PTHR24093:SF417	InterPro:P_typ_ATPase	EnsemblPlantsGene:SORBI_3006G173800	SUPFAM:SSF55008
SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525
TMHMM:TMhelix	UniParc:UPI00081AB9AB	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:52976303..52983018

Molecular Weight (calculated)

116901.0 Da

IEP (calculated)

6.226

GRAVY (calculated)

0.131

Length

1082 amino acids

Sequence
(BLAST)

0001: MLLRYAHQLD TEQTQCTCCF SRCSVASPCS LSSLSHSHTH NPPADAGLFA TFYKCRRGSN QITRNPPTNS PTPSALEWSG GGTAMVATTR ALLVSCFHGG
0101: GGGGGGGSEM SSRLSLRPRY PSMPRRPKGV AVAGGGGDGD LEAAVGTGDE EEEKVAVFSV SGMTCAACAG SVEKAVKRLP GIHDAAVDVL WGRAQVVFCP
0201: AFVSENKITE AIEDVGFEAK LIDEEVKEKN VLLCRLHIKG MACKYCTSTV EFALQASPGV QRASVALATE EAEIRYDRRI ISASQLIQAV EETGFEAILV
0301: TTGEDQSRID LKMDGVLDET LIMILKSSVQ ALPGVENITF NSELHKVTIS YKPDQTGPRD LIEVINSATF GHVNASIYLE ADGRDQHRYG EIKRYRQSFL
0401: WSLIFTIPVF LTSMVFMYIP WLKDGLEKKV VNMMSIGELV RWILSTPVQF VIGRKFYAGA YKAMCRGSPN MDVLIALGTN TAYFYSVYSV LRAATSENYM
0501: STDFFETSSM LISFILLGKY LEILAKGKTS EAIAKLMDLA PETATLLMYD HEGNVVGEKE IDSRLIQKND VIKVVPGGKV ASDGFVIWGQ SHVNESMVTG
0601: ESRPVAKRKG DTVIGGTVNE NGVLHVRATF VGSEGALAQI VRLVESAQMA KAPVQKFADH ISRVFVPLVI LFSMLTWLTW FVAGRLHSYP HSWIPQSMDS
0701: FQLALQFGIS VMVIACPCAL GLATPTAVMV ATGVGASHGV LIKGGQALES AQKVDCIVFD KTGTLTIGKP VVVDTKLLKN MVLREFYDYA AAAEVNSEHP
0801: LAKAIVEHAK KLHPEENHIW PEAREFISVT GQGVKVDVSD KSVIVGNKSF MLSSGIDISL EALEILMEEE EKARTGIIVA IDQEVVGIIS VSDPIKPNAH
0901: EVISYLKSMN VESIMVTGDN WGTANAIGKE VGIEKIIAEA KPEQKAERVK ELQLSGRTVA MVGDGINDSP ALVSADVGLA IGAGTDVAIE AADIVLMKSN
1001: LEDVITAIDL SRKTFFRIRM NYVWALGYNV IGIPIAAGVL FPSTGFRLPP WVAGAAMAAS SVSVVCWSLL LRYYKAPKIV GS

Best Arabidopsis Sequence Match ( AT1G63440.1 )
(BLAST)

001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV

Arabidopsis Description

HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.