CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY00957
CDY08589

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63440.1	CDY00957	AT1G66240.1	16367966
AT1G63440.1	CDY08589	AT1G66240.1	16367966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34353	Canola	mitochondrion	94.2	94.38
AT1G63440.1	Thale cress	mitochondrion	86.36	89.75
PGSC0003DMT400032161	Potato	cytosol, plasma membrane, vacuole	11.03	86.36
CDX91834	Canola	cytosol, peroxisome, plasma membrane	69.63	83.92
CDX93870	Canola	endoplasmic reticulum, plasma membrane	59.19	83.84
VIT_02s0025g03640.t01	Wine grape	golgi, peroxisome, plasma membrane	39.94	83.27
KRH41158	Soybean	plasma membrane	53.19	81.12
CDY50396	Canola	cytosol	73.98	78.62
GSMUA_Achr5P12290_001	Banana	plasma membrane	42.55	78.57
KRH59857	Soybean	cytosol	18.47	77.96
CDY49160	Canola	cytosol	72.92	77.49
KRG95266	Soybean	cytosol	70.21	73.78
HORVU2Hr1G097010.1	Barley	plasma membrane	47.78	73.51
Solyc08g080870.2.1	Tomato	cytosol	67.6	73.27
KRH77528	Soybean	mitochondrion	60.06	71.79
GSMUA_Achr5P12300_001	Banana	cytosol	52.13	67.63
Zm00001d002708_P001	Maize	mitochondrion	63.93	66.17
Os04t0556000-01	Rice	plastid	63.93	65.97
EES11247	Sorghum	mitochondrion	63.73	65.77
TraesCS2B01G429200.2	Wheat	mitochondrion	62.96	65.49
TraesCS2D01G407800.5	Wheat	plastid	63.25	65.4
TraesCS2A01G410400.3	Wheat	mitochondrion	62.77	64.19
Zm00001d002705_P002	Maize	cytosol, plastid	62.48	62.36
GSMUA_Achr1P00300_001	Banana	cytosol	52.13	61.32
KXG26864	Sorghum	cytosol, plasma membrane, plastid	62.48	59.7
CDY67984	Canola	cytosol, peroxisome, plasma membrane	13.93	58.78
CDY26408	Canola	golgi, nucleus, plasma membrane	8.32	49.71
CDY50771	Canola	cytosol	43.62	45.37
CDY39400	Canola	cytosol	43.71	45.25
VIT_02s0025g03630.t01	Wine grape	cytosol	70.7	37.76
CDY69037	Canola	cytosol	20.99	37.16
CDY67659	Canola	cytosol	21.08	36.64
CDY51647	Canola	golgi, plasma membrane, vacuole	10.25	30.64
CDX92394	Canola	plastid	25.82	30.17
CDY16605	Canola	plastid	25.63	29.94
CDX75363	Canola	plastid	26.4	29.14
CDX68986	Canola	plastid	26.31	29.06
CDY67923	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	4.45	27.54
CDY67922	Canola	cytosol	6.29	27.31
CDY69827	Canola	plasma membrane	16.63	27.3
CDX68627	Canola	cytosol, plasma membrane, vacuole	18.28	24.93
CDY69511	Canola	plasma membrane	17.21	24.86
CDY28160	Canola	cytosol	17.99	24.54
CDX68625	Canola	plasma membrane	17.02	24.11
CDY30170	Canola	cytosol, peroxisome, plasma membrane	19.83	23.43
CDY62400	Canola	plasma membrane	19.73	23.39
CDX69288	Canola	plastid	18.09	22.83
CDX75636	Canola	mitochondrion	17.99	22.77
CDY46080	Canola	plastid	14.6	22.37
CDY72630	Canola	golgi, plasma membrane, vacuole	7.45	22.13
CDX68623	Canola	cytosol, endoplasmic reticulum, plasma membrane	11.03	20.88
CDY28206	Canola	plasma membrane	14.51	20.8
CDY51090	Canola	cytosol	19.44	18.47
CDY51690	Canola	cytosol, plasma membrane, vacuole	2.9	17.54
CDY36489	Canola	cytosol	19.05	17.15
CDY51646	Canola	cytosol, plasma membrane, vacuole	3.0	15.9
CDY08717	Canola	cytosol, nucleus, plasma membrane	19.25	12.76
CDY51648	Canola	cytosol	0.19	2.94

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	GO:A0A078GLK0
UniProt:A0A078GLK0	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	EnsemblPlants:CDY25498
ProteinID:CDY25498	ProteinID:CDY25498.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829	GO:GO:0030001	GO:GO:0046872
GO:GO:0099132	EnsemblPlantsGene:GSBRNA2T00032731001	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	InterPro:P-typ_ATPase_IB
PFAM:PF00122	PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00942	ScanProsite:PS00154
ScanProsite:PS01047	PFscan:PS50846	PANTHER:PTHR24093	PANTHER:PTHR24093:SF417	InterPro:P_typ_ATPase	SUPFAM:SSF55008
SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525
TMHMM:TMhelix	UniParc:UPI0004EEA5B2	SEG:seg	:	:	:

Description

BnaC09g11230DBnaC09g11230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLK0]

Coordinates

chrLK032176:+:100260..107716

Molecular Weight (calculated)

112580.0 Da

IEP (calculated)

6.482

GRAVY (calculated)

0.147

Length

1034 amino acids

Sequence
(BLAST)

0001: MATKLLSLTC IRKERFSGRY PVLWKHLNNR PRGGGGDGSP SETAVLKIDD EEAIASAVFG VTGMTCSACA GSIEKEIKRL PGIHEAVIDA LNHRAQIQFY
0101: PSSVNVETIR ETIEDAGFEA SLIENEANER SRQVCRIRIN GMTCTSCSST IESVLQSLNG VQRAHVALAI EEAEVHYDPT LLSYDKLLEE IENAGFEAVL
0201: ISTGEDVSKI DLKIDGEFTD ESMMMIEKSL EALPGVQSVE ISHGSDKISV LYKPDVTGPR NFIRVIESTV FGHSGHIKAT VFSEGGVGRE SQKQEEIKQY
0301: YKSFLWSLVF TVPVFLTAMV FMYIPGIKHL LMYKVVNMLT IGEITRWLLA TPVQFIIGWR FYVGSYRALR RGSANMDVLI ALGTNAAYFY SLYTTSAMLI
0401: SFIILGKYLE IMAKGKTSQA IAKLMNLAPD TAILLAVDEE GSVTGEEEID GRLIQKNDVI KIVPGAKVAS DGYVIWGQSH VNESMITGEA RPVAKRKGDT
0501: VIGGTLNENG VLHVKVTRVG SESALAQIVR LVESAQLAKA PVQKLADRIS KFFVPLVIFL SFSTWLAWFL AGKLHWYPEA WIPSSMDSFE LALQFGISVM
0601: VIACPCALGL ATPTAVMVGT GVGASQGVLI KGGQALERAH KVNCIVFDKT GTLTMGKPVV VKTKLLKNMV LREFYELVAA TEVNSEHPLA KAIVEYGKKF
0701: RDDEENPAWP EAHGFVSITG NGVRATVNGK EIMVGNKNFM SGYKINITAD AEELLAEAEG MAQTGILVSI DSELVGVLAV SDPVKPNARE AISILKSMNI
0801: KSIMVTGDNW GTANSIAREV GIDSVIAEAK PEQKAEKVKE LQAAGHVVAM VGDGVNDSPA LVAADVGMAI GAGTDIAIEA ADIVLMKSNL EDVITAIDLS
0901: RKTFSRIRLN YVWALGYNLM GIPIAAGVLF PSTRFRLPPW IAGAAMAASS VSVVCCSLLL KNYKRPKRLD SLAIREMLRN GPRFVSLLVL GCVLSDEDDV
1001: LHHLQWYAKF SFIFHSIFRK AQQAEIITTA TAHH

Best Arabidopsis Sequence Match ( AT1G63440.1 )
(BLAST)

001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV

Arabidopsis Description

HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.