CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67640
CDX72154
CDX76052
CDY00957
CDY08589
CDY32007
CDY43346
CDY71670

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44790.1	CDY00957	AT1G66240.1	17223078
AT5G44790.1	CDY08589	AT1G66240.1	17223078
AT5G44790.1	CDX67640	AT3G56240.1	17223078
AT5G44790.1	CDX72154	AT3G56240.1	17223078
AT5G44790.1	CDX76052	AT3G56240.1	17223078
AT5G44790.1	CDY32007	AT3G56240.1	17223078
AT5G44790.1	CDY43346	AT3G56240.1	17223078
AT5G44790.1	CDY71670	AT3G56240.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69037	Canola	cytosol	95.97	97.77
Bra027573.1-P	Field mustard	cytosol	96.47	57.29
CDY39400	Canola	cytosol	85.55	50.95
CDY50771	Canola	cytosol	84.54	50.6
HORVU6Hr1G031960.1	Barley	plastid	48.24	50.0
AT5G44790.1	Thale cress	cytosol	82.35	48.95
VIT_01s0011g01360.t01	Wine grape	cytosol	68.91	41.0
KRH58516	Soybean	cytosol	67.56	40.44
KRH12191	Soybean	cytosol	67.39	40.26
PGSC0003DMT400024409	Potato	cytosol	67.39	40.02
Solyc02g068490.2.1	Tomato	cytosol	67.39	39.98
KRH37212	Soybean	cytosol	66.22	39.96
KRH42397	Soybean	cytosol	66.22	39.64
GSMUA_Achr5P26800_001	Banana	cytosol	57.82	36.75
TraesCS6B01G184800.1	Wheat	cytosol	59.83	36.63
GSMUA_Achr8P06970_001	Banana	cytosol	56.97	35.91
EES06348	Sorghum	cytosol	60.17	35.91
Zm00001d053783_P001	Maize	plasma membrane	59.83	35.67
Os02t0172600-00	Rice	cytosol	60.0	35.66
TraesCS6D01G146500.1	Wheat	cytosol	59.66	35.57
TraesCS6A01G156900.1	Wheat	cytosol	59.5	35.51
KXG20553	Sorghum	plasma membrane	60.0	35.45
TraesCS7A01G480100.1	Wheat	cytosol	59.16	35.16
Os06t0665800-01	Rice	cytosol	59.16	35.09
TraesCS7B01G382300.1	Wheat	cytosol	58.99	35.06
TraesCS7D01G467100.1	Wheat	cytosol	58.99	35.06
HORVU7Hr1G108890.1	Barley	cytosol, mitochondrion	55.97	32.55
CDY26408	Canola	golgi, nucleus, plasma membrane	9.41	32.37
Zm00001d046953_P002	Maize	cytosol, endoplasmic reticulum, plasma membrane	53.28	30.66
CDY72630	Canola	golgi, plasma membrane, vacuole	15.13	25.86
CDX93870	Canola	endoplasmic reticulum, plasma membrane	27.9	22.74
CDY49160	Canola	cytosol	36.3	22.2
CDY50396	Canola	cytosol	36.3	22.2
CDX91834	Canola	cytosol, peroxisome, plasma membrane	30.42	21.1
CDY25498	Canola	mitochondrion	36.64	21.08
CDY34353	Canola	mitochondrion	36.13	20.83
CDY51646	Canola	cytosol, plasma membrane, vacuole	6.72	20.51
CDY51690	Canola	cytosol, plasma membrane, vacuole	5.88	20.47
CDX92394	Canola	plastid	20.5	13.79
CDY16605	Canola	plastid	20.5	13.79
CDX68986	Canola	plastid	19.83	12.61
CDX75363	Canola	plastid	19.66	12.49
CDY28160	Canola	cytosol	15.13	11.87
CDX68627	Canola	cytosol, plasma membrane, vacuole	14.96	11.74
Zm00001d027860_P001	Maize	plasma membrane	3.03	10.71
CDY30170	Canola	cytosol, peroxisome, plasma membrane	15.29	10.4
CDY62400	Canola	plasma membrane	15.13	10.32
CDY28206	Canola	plasma membrane	10.76	8.88
CDX75636	Canola	mitochondrion	11.6	8.45
CDX69288	Canola	plastid	11.6	8.42
CDY69827	Canola	plasma membrane	8.91	8.41
CDY51090	Canola	cytosol	14.96	8.18
CDY69511	Canola	plasma membrane	9.75	8.1
CDX68625	Canola	plasma membrane	9.58	7.81
CDY36489	Canola	cytosol	14.96	7.75
Zm00001d011553_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	2.35	7.65
CDY46080	Canola	plastid	8.4	7.41
CDY08717	Canola	cytosol, nucleus, plasma membrane	14.96	5.71
CDX68623	Canola	cytosol, endoplasmic reticulum, plasma membrane	2.18	2.38
CDY51647	Canola	golgi, plasma membrane, vacuole	0.84	1.45
CDY67984	Canola	cytosol, peroxisome, plasma membrane	0.0	0.0
CDY67923	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	0.0	0.0
CDY67922	Canola	cytosol	0.0	0.0
CDY51648	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	GO:A0A078JLH1	UniProt:A0A078JLH1	InterPro:ATPase_P-typ_transduc_dom_A_sf
EnsemblPlants:CDY67659	ProteinID:CDY67659	ProteinID:CDY67659.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00065283001	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS
InterPro:IPR006121	PFAM:PF00122	PFAM:PF00403	PRINTS:PR00942	ScanProsite:PS01047	PFscan:PS50846
PANTHER:PTHR43520	PANTHER:PTHR43520:SF14	InterPro:P_typ_ATPase	SUPFAM:SSF55008	SUPFAM:SSF81653	TIGRFAMs:TIGR00003
TIGRFAMs:TIGR01494	TMHMM:TMhelix	UniParc:UPI0004EDF29B	SEG:seg	:	:

Description

BnaA09g53550DBnaA09g53550D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JLH1]

Coordinates

chrLK036357:+:6522..9314

Molecular Weight (calculated)

63852.2 Da

IEP (calculated)

4.619

GRAVY (calculated)

0.207

Length

595 amino acids

Sequence
(BLAST)

001: MAPSRRDIQL TRITGHSLGS SDAENVEMEG VRLLDSYDDD EENAHFLSKI EGGSGDSGLK KIQVGITGMT CAACSNAVEG ALMSVNGVFK ASVALLQNRA
101: DVVFDPNLIK EEDIKEAIED AGFEAEILAD PVTAGTKTTL VGQFTIGGMT CAACVNSVEG ILKDLPGVKR AVVALATSLG EVEYDPNLIN KDDIITAIED
201: AGFEGSLVQS NQQDKLLLRV DGVLNELDAQ VLEGILTRLN GVRQFRVDSL SGELDVVFDP EVVNSRTLVD DIEGEGYGKF KLRVMSPYER LTSKDTGEAS
301: KMFRLNVYGP KILEPVREFT GLKSIPLFCI QVICPYIAAL NNVLVWRCGP FMMSDWFKWG LVSIIQFVIG KRFYVAAWRA LRNGSTNMDV LVALGTSASY
401: FYSVGALLYG AVTGFWSPTY FDASAMLITF VLLGKYLESL AKGKTSDAMK KLVQLTPATA VLLIEGKGKK FVGEREIDAL LIQPGDSLKV VPGGKIPADG
501: VVVWGSSYVN ESMVTGESVP VSKEVGSPVI GGTINTHGAL HIKATKVGSD AVLSQIISLV ETAQMSKAPI QQFADYVASI FVPVVVTLSL ITLVG

Best Arabidopsis Sequence Match ( AT5G44790.1 )
(BLAST)

0001: MAPSRRDLQL TPVTGGSSSQ ISDMEEVGLL DSYHNEANAD DILTKIEEGR DVSGLRKIQV GVTGMTCAAC SNSVEAALMN VNGVFKASVA LLQNRADVVF
0101: DPNLVKEEDI KEAIEDAGFE AEILAEEQTQ ATLVGQFTIG GMTCAACVNS VEGILRDLPG VKRAVVALST SLGEVEYDPN VINKDDIVNA IEDAGFEGSL
0201: VQSNQQDKLV LRVDGILNEL DAQVLEGILT RLNGVRQFRL DRISGELEVV FDPEVVSSRS LVDGIEEDGF GKFKLRVMSP YERLSSKDTG EASNMFRRFI
0301: SSLVLSIPLF FIQVICPHIA LFDALLVWRC GPFMMGDWLK WALVSVIQFV IGKRFYVAAW RALRNGSTNM DVLVALGTSA SYFYSVGALL YGAVTGFWSP
0401: TYFDASAMLI TFVLLGKYLE SLAKGKTSDA MKKLVQLTPA TAILLTEGKG GKLVGEREID ALLIQPGDTL KVHPGAKIPA DGVVVWGSSY VNESMVTGES
0501: VPVSKEVDSP VIGGTINMHG ALHMKATKVG SDAVLSQIIS LVETAQMSKA PIQKFADYVA SIFVPVVITL ALFTLVGWSI GGAVGAYPDE WLPENGTHFV
0601: FSLMFSISVV VIACPCALGL ATPTAVMVAT GVGATNGVLI KGGDALEKAH KVKYVIFDKT GTLTQGKATV TTTKVFSEMD RGEFLTLVAS AEASSEHPLA
0701: KAIVAYARHF HFFDESTEDG ETNNKDLQNS GWLLDTSDFS ALPGKGIQCL VNEKMILVGN RKLMSENAIN IPDHVEKFVE DLEESGKTGV IVAYNGKLVG
0801: VMGIADPLKR EAALVVEGLL RMGVRPIMVT GDNWRTARAV AKEVGIEDVR AEVMPAGKAD VIRSLQKDGS TVAMVGDGIN DSPALAAADV GMAIGAGTDV
0901: AIEAADYVLM RNNLEDVITA IDLSRKTLTR IRLNYVFAMA YNVVSIPIAA GVFFPVLRVQ LPPWAAGACM ALSSVSVVCS SLLLRRYKKP RLTTVLKITT
1001: E

Arabidopsis Description

RAN1Copper-transporting ATPase RAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.