CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92037
KRH34745

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44790.1	KRG92037	AT3G56240.1	17223078
AT5G44790.1	KRH34745	AT3G56240.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58516	Soybean	cytosol	95.67	95.67
KRH37212	Soybean	cytosol	83.8	84.48
KRH12191	Soybean	cytosol	84.31	84.14
VIT_01s0011g01360.t01	Wine grape	cytosol	79.07	78.6
Solyc02g068490.2.1	Tomato	cytosol	76.56	75.87
PGSC0003DMT400024409	Potato	cytosol	76.26	75.65
CDY39400	Canola	cytosol	75.65	75.28
CDY50771	Canola	cytosol	75.05	75.05
Bra025102.1-P	Field mustard	cytosol	75.05	74.82
AT5G44790.1	Thale cress	cytosol	75.15	74.63
Bra027573.1-P	Field mustard	cytosol	72.33	71.76
GSMUA_Achr8P06970_001	Banana	cytosol	66.3	69.81
GSMUA_Achr5P26800_001	Banana	cytosol	65.19	69.23
EES06348	Sorghum	cytosol	69.42	69.21
TraesCS6A01G156900.1	Wheat	cytosol	68.71	68.51
TraesCS6D01G146500.1	Wheat	cytosol	68.61	68.34
Zm00001d053783_P001	Maize	plasma membrane	68.61	68.34
Os06t0665800-01	Rice	cytosol	68.61	68.0
TraesCS6B01G184800.1	Wheat	cytosol	66.4	67.9
Zm00001d027860_P001	Maize	plasma membrane	11.47	67.86
CDY69037	Canola	cytosol	39.74	67.64
TraesCS7A01G480100.1	Wheat	cytosol	68.11	67.63
TraesCS7D01G467100.1	Wheat	cytosol	67.91	67.43
TraesCS7B01G382300.1	Wheat	cytosol	67.71	67.23
Os02t0172600-00	Rice	cytosol	67.71	67.23
KXG20553	Sorghum	plasma membrane	67.1	66.24
CDY67659	Canola	cytosol	39.64	66.22
Zm00001d011553_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	11.97	65.03
HORVU7Hr1G108890.1	Barley	cytosol, mitochondrion	66.2	64.32
Zm00001d046953_P002	Maize	cytosol, endoplasmic reticulum, plasma membrane	61.97	59.57
KRH59857	Soybean	cytosol	13.58	55.1
KRH41158	Soybean	plasma membrane	37.32	54.72
HORVU6Hr1G031960.1	Barley	plastid	29.48	51.05
KRH27938	Soybean	plasma membrane	13.98	48.94
KRH77528	Soybean	mitochondrion	40.44	46.47
KRG95266	Soybean	cytosol	45.98	46.44
KRH66147	Soybean	cytosol	43.66	45.49
KRH07428	Soybean	cytosol	41.55	45.24
KRH77529	Soybean	cytosol	44.06	44.83
KRH58274	Soybean	plasma membrane	24.75	33.38
KRH61581	Soybean	plastid	15.49	30.5
KRH52252	Soybean	plastid	26.76	29.46
KRH42155	Soybean	plastid	27.26	28.92
KRH02816	Soybean	plasma membrane	21.03	27.94
KRH37273	Soybean	cytosol, plasma membrane, vacuole	22.33	25.08
KRH04519	Soybean	plastid	18.11	22.03
KRH57989	Soybean	plasma membrane, plastid	18.31	21.88
KRH19069	Soybean	plasma membrane	22.64	20.53

Protein Annotations

EntrezGene:100778219	Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000
EMBL:ACUP02004803	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	EnsemblPlantsGene:GLYMA_08G087300
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019829	GO:GO:0030001	GO:GO:0046872	GO:GO:0099132	InterPro:HAD-like_sf
InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS	UniProt:I1KRI8
InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	EnsemblPlants:KRH42397	ProteinID:KRH42397	ProteinID:KRH42397.1
InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120
ScanProsite:PS00154	ScanProsite:PS01047	PFscan:PS50846	PANTHER:PTHR43520	PANTHER:PTHR43520:SF14	InterPro:P_typ_ATPase
SUPFAM:SSF55008	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494
TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI00023392B2	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:6604466..6610091

Molecular Weight (calculated)

106024.0 Da

IEP (calculated)

5.007

GRAVY (calculated)

0.351

Length

994 amino acids

Sequence
(BLAST)

001: MAPSTGDVQL TSPGAGQDFD DLEDIRLLDS YDKNDVVHDE TKRIQVRISG MTCAACSNSV QTALRSVHGV TEASVALLQN KAEVVFIPGL VKDEDIKNAI
101: EDAGFEAEIL PDSGAAAHAA ASAAVLGQFT IVGMTCAACV NSVEGILRNL NGVKRAVVAL ATSLGEVEYD PHVISKDDIV SAIEDAGFEG AFVQSNGRDQ
201: IVLGVSGVYS LGDAQVLEAM LSGTKGVRQF RFDTAVNELD VVFDPEVISS RSLVDGIQLG SNGKFKLHVR NPYARMASKD GSESSAMFRL FISSLFLSIP
301: LFFMGVICPH IPLVYSLLLW RCGPFLMGDW LNWALVSVIQ FVIGKRFYIA AGRALRNGST NMDVLVALGT TASYVYSVCA LLYGALTGFW SPTYFETSAM
401: LITFVLLGKY LECLAKGKTS DAIKKLVELT PATALLIVKD KGGRTIEERE IDSLLVQPGD TLKVLPGTKI PADGIVTWGS SYVNESMVTG ESIPVSKDVN
501: ASVIGGTINL HGVLHVQATK VGSDTVLSQI ISLVETAQMS KAPIQKFADY VASIFVPTVV VLALLTLLCW YIAGALGAYP DEWLPKNGNH FVFALMFSIS
601: VVVIACPCAL GLATPTAVMV ATGVGANNGV LIKGGDSLER AQMVKYVIFD KTGTLTQAKA TVTAAKVFAG MDRGDFLTLV ASAEASSEHP LAKAISQYAR
701: HFHFFEESSP TSGTKNAAEE FKSGWLYDVS DFSALPGRGI QCFIDGRRIL VGNRKLLEEN GINISTEVES FVVEIEESAK TGILVAYDDI LIGVLGIADP
801: LKREAAVVIE GLQKMGVIPV MVTGDNWRTA RAVAKEVGIQ DVRAEVMPAG KADVVRSFQK DGSIVAMVGD GINDSPALAA ADVGMAIGAG TDVAIEAANY
901: VLMRDNLEDV ITAIDLSRKT FFRIRLNYVF AMAYNVVAIP VAAGVFFPSL GIKLPPWVAG ACMALSSVSV VCSSLLLRRY RKPKLTTILE IVVN

Best Arabidopsis Sequence Match ( AT5G44790.1 )
(BLAST)

0001: MAPSRRDLQL TPVTGGSSSQ ISDMEEVGLL DSYHNEANAD DILTKIEEGR DVSGLRKIQV GVTGMTCAAC SNSVEAALMN VNGVFKASVA LLQNRADVVF
0101: DPNLVKEEDI KEAIEDAGFE AEILAEEQTQ ATLVGQFTIG GMTCAACVNS VEGILRDLPG VKRAVVALST SLGEVEYDPN VINKDDIVNA IEDAGFEGSL
0201: VQSNQQDKLV LRVDGILNEL DAQVLEGILT RLNGVRQFRL DRISGELEVV FDPEVVSSRS LVDGIEEDGF GKFKLRVMSP YERLSSKDTG EASNMFRRFI
0301: SSLVLSIPLF FIQVICPHIA LFDALLVWRC GPFMMGDWLK WALVSVIQFV IGKRFYVAAW RALRNGSTNM DVLVALGTSA SYFYSVGALL YGAVTGFWSP
0401: TYFDASAMLI TFVLLGKYLE SLAKGKTSDA MKKLVQLTPA TAILLTEGKG GKLVGEREID ALLIQPGDTL KVHPGAKIPA DGVVVWGSSY VNESMVTGES
0501: VPVSKEVDSP VIGGTINMHG ALHMKATKVG SDAVLSQIIS LVETAQMSKA PIQKFADYVA SIFVPVVITL ALFTLVGWSI GGAVGAYPDE WLPENGTHFV
0601: FSLMFSISVV VIACPCALGL ATPTAVMVAT GVGATNGVLI KGGDALEKAH KVKYVIFDKT GTLTQGKATV TTTKVFSEMD RGEFLTLVAS AEASSEHPLA
0701: KAIVAYARHF HFFDESTEDG ETNNKDLQNS GWLLDTSDFS ALPGKGIQCL VNEKMILVGN RKLMSENAIN IPDHVEKFVE DLEESGKTGV IVAYNGKLVG
0801: VMGIADPLKR EAALVVEGLL RMGVRPIMVT GDNWRTARAV AKEVGIEDVR AEVMPAGKAD VIRSLQKDGS TVAMVGDGIN DSPALAAADV GMAIGAGTDV
0901: AIEAADYVLM RNNLEDVITA IDLSRKTLTR IRLNYVFAMA YNVVSIPIAA GVFFPVLRVQ LPPWAAGACM ALSSVSVVCS SLLLRRYKKP RLTTVLKITT
1001: E

Arabidopsis Description

RAN1Copper-transporting ATPase RAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.