CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92037
KRH34745

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44790.1	KRG92037	AT3G56240.1	17223078
AT5G44790.1	KRH34745	AT3G56240.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37212	Soybean	cytosol	94.48	95.44
KRH58516	Soybean	cytosol	84.74	84.91
KRH42397	Soybean	cytosol	84.14	84.31
VIT_01s0011g01360.t01	Wine grape	cytosol	79.42	79.1
Solyc02g068490.2.1	Tomato	cytosol	77.21	76.67
PGSC0003DMT400024409	Potato	cytosol	77.01	76.55
CDY50771	Canola	cytosol	75.7	75.86
AT5G44790.1	Thale cress	cytosol	76.2	75.82
CDY39400	Canola	cytosol	76.0	75.78
Bra025102.1-P	Field mustard	cytosol	75.4	75.33
Bra027573.1-P	Field mustard	cytosol	72.69	72.26
GSMUA_Achr5P26800_001	Banana	cytosol	66.67	70.94
GSMUA_Achr8P06970_001	Banana	cytosol	66.87	70.55
EES06348	Sorghum	cytosol	70.08	70.01
TraesCS6A01G156900.1	Wheat	cytosol	69.68	69.61
TraesCS6D01G146500.1	Wheat	cytosol	69.68	69.54
Zm00001d053783_P001	Maize	plasma membrane	69.18	69.04
CDY69037	Canola	cytosol	40.36	68.84
TraesCS6B01G184800.1	Wheat	cytosol	67.17	68.83
Os06t0665800-01	Rice	cytosol	69.18	68.69
Os02t0172600-00	Rice	cytosol	68.98	68.63
Zm00001d027860_P001	Maize	plasma membrane	11.55	68.45
KXG20553	Sorghum	plasma membrane	68.67	67.92
TraesCS7A01G480100.1	Wheat	cytosol	68.07	67.73
TraesCS7D01G467100.1	Wheat	cytosol	67.87	67.53
TraesCS7B01G382300.1	Wheat	cytosol	67.87	67.53
CDY67659	Canola	cytosol	40.26	67.39
HORVU7Hr1G108890.1	Barley	cytosol, mitochondrion	66.27	64.52
Zm00001d011553_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	11.85	64.48
Zm00001d046953_P002	Maize	cytosol, endoplasmic reticulum, plasma membrane	63.55	61.22
KRH59857	Soybean	cytosol	13.96	56.73
KRH41158	Soybean	plasma membrane	37.95	55.75
HORVU6Hr1G031960.1	Barley	plastid	30.42	52.79
KRH77528	Soybean	mitochondrion	41.57	47.86
KRG95266	Soybean	cytosol	47.09	47.66
KRH27938	Soybean	plasma membrane	13.45	47.18
KRH66147	Soybean	cytosol	44.38	46.33
KRH77529	Soybean	cytosol	45.28	46.16
KRH07428	Soybean	cytosol	42.17	46.0
KRH61581	Soybean	plastid	16.77	33.07
KRH58274	Soybean	plasma membrane	24.4	32.97
KRH52252	Soybean	plastid	27.61	30.45
KRH42155	Soybean	plastid	27.21	28.92
KRH02816	Soybean	plasma membrane	19.88	26.47
KRH37273	Soybean	cytosol, plasma membrane, vacuole	21.89	24.63
KRH04519	Soybean	plastid	17.97	21.91
KRH57989	Soybean	plasma membrane, plastid	18.27	21.88
KRH19069	Soybean	plasma membrane	21.59	19.62

Protein Annotations

EntrezGene:100804960	Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000
EMBL:ACUP02009275	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	EnsemblPlantsGene:GLYMA_15G158300	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575
GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019829	GO:GO:0030001	GO:GO:0046872	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom	InterPro:HMA_dom_sf	UniProt:I1MGV5	InterPro:IPR006121	InterPro:IPR023214
InterPro:IPR023299	EnsemblPlants:KRH12191	ProteinID:KRH12191	ProteinID:KRH12191.1	InterPro:P-typ_ATPase_IB	PFAM:PF00122
PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120	PFscan:PS50846	PANTHER:PTHR43520
PANTHER:PTHR43520:SF14	InterPro:P_typ_ATPase	SUPFAM:SSF55008	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665
TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI000233B489	SEG:seg

Description

hypothetical protein

Coordinates

chr15:-:13263648..13271389

Molecular Weight (calculated)

106390.0 Da

IEP (calculated)

4.741

GRAVY (calculated)

0.330

Length

996 amino acids

Sequence
(BLAST)

001: MAPGIGGLQL TSLAGDRRTA AADSDELEDM RLLDSYDEIN GGARRIQVEV TGMTCAACSN SVESALKSLD GVISASVALL QNKADVVFNT ALLKDEDIKN
101: AIEDAGFEAD ILPESSTVGK VPQGTLVGQF TIGGMTCAAC VNSVEGILRN LPGVRRAVVA LATSSGEVEY DPSVISKDDI VNAIEDSGFD GSFIQSNEQD
201: KIILRVVGVY SLIDAQVLEG ILSSTKGVRQ FHFDQVSGEL DVLFDPEVLS SRSVVDAIQE GSNGKFKLHV RSPYTRMASK DVAETSTIFR LFISSLFLSI
301: PLFFMRVVCP HIPLFYSLLL WRCGPFLMGD WLKWALVSVI QFVIGKRFYI AASRALRNGS TNMDVLVAVG TTASYVYSVC ALLYGALTGF WSPTYFETSA
401: MLITFVLLGK YLECLAKGKT SDAIKKLVEL TPATALLVVK DKGGKSIEVR EIDSLLIQPG DTLKVLPGAK IPADGIVTWG SSYVNESMVT GESVPIMKEV
501: NASVIGGTIN LHGVLHIQAT KVGSDTVLSQ IISLVETAQM SKAPIQKFAD YVASIFVPSV VSLALLTLLG WYVAGSIGAY PEEWLPENGN HFVFALMFSI
601: SVVVIACPCA LGLATPTAVM VATGVGANNG VLIKGGDALE RAQRVKYVIF DKTGTLTQGK ATVTAAKTFT GMERGEFLKL VASAEASSEH PLAKAILAYA
701: RHFHFFDDSS DTTGTEIDAE NDAKSGWLFD VSDFSALPGI GVQCFIDGKL ILVGNRKLME ENGIDISTEV ENFVVELEES AKTGILVAYN DILTGVLGIA
801: DPLKREASVV IEGLQKMGVT PVMVTGDNWR TARAVAKEVG IQDVRAEVMP AGKADVVRSF QKDGSIVAMV GDGINDSPAL AAADVGMAIG AGTDIAIEAA
901: EYVLMRNNLE DVITAIDLSR KTFSRIRLNY VFAMAYNVVA IPVAAGVFYP SLGIKLPPWV AGACMALSSV SVVCSSLLLK RYKRPRLTTI LEIIVE

Best Arabidopsis Sequence Match ( AT5G44790.1 )
(BLAST)

0001: MAPSRRDLQL TPVTGGSSSQ ISDMEEVGLL DSYHNEANAD DILTKIEEGR DVSGLRKIQV GVTGMTCAAC SNSVEAALMN VNGVFKASVA LLQNRADVVF
0101: DPNLVKEEDI KEAIEDAGFE AEILAEEQTQ ATLVGQFTIG GMTCAACVNS VEGILRDLPG VKRAVVALST SLGEVEYDPN VINKDDIVNA IEDAGFEGSL
0201: VQSNQQDKLV LRVDGILNEL DAQVLEGILT RLNGVRQFRL DRISGELEVV FDPEVVSSRS LVDGIEEDGF GKFKLRVMSP YERLSSKDTG EASNMFRRFI
0301: SSLVLSIPLF FIQVICPHIA LFDALLVWRC GPFMMGDWLK WALVSVIQFV IGKRFYVAAW RALRNGSTNM DVLVALGTSA SYFYSVGALL YGAVTGFWSP
0401: TYFDASAMLI TFVLLGKYLE SLAKGKTSDA MKKLVQLTPA TAILLTEGKG GKLVGEREID ALLIQPGDTL KVHPGAKIPA DGVVVWGSSY VNESMVTGES
0501: VPVSKEVDSP VIGGTINMHG ALHMKATKVG SDAVLSQIIS LVETAQMSKA PIQKFADYVA SIFVPVVITL ALFTLVGWSI GGAVGAYPDE WLPENGTHFV
0601: FSLMFSISVV VIACPCALGL ATPTAVMVAT GVGATNGVLI KGGDALEKAH KVKYVIFDKT GTLTQGKATV TTTKVFSEMD RGEFLTLVAS AEASSEHPLA
0701: KAIVAYARHF HFFDESTEDG ETNNKDLQNS GWLLDTSDFS ALPGKGIQCL VNEKMILVGN RKLMSENAIN IPDHVEKFVE DLEESGKTGV IVAYNGKLVG
0801: VMGIADPLKR EAALVVEGLL RMGVRPIMVT GDNWRTARAV AKEVGIEDVR AEVMPAGKAD VIRSLQKDGS TVAMVGDGIN DSPALAAADV GMAIGAGTDV
0901: AIEAADYVLM RNNLEDVITA IDLSRKTLTR IRLNYVFAMA YNVVSIPIAA GVFFPVLRVQ LPPWAAGACM ALSSVSVVCS SLLLRRYKKP RLTTVLKITT
1001: E

Arabidopsis Description

RAN1Copper-transporting ATPase RAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.