Factsheet for GSMUA_Achr5P26800_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
BaCelLo:	cytosol
EpiLoc:	plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P07500_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44790.1	GSMUA_Achr6P07500_001	AT1G66240.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P06970_001	Banana	cytosol	83.23	82.52
Zm00001d027860_P001	Maize	plasma membrane	13.68	76.19
Zm00001d011553_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	14.42	73.77
EES06348	Sorghum	cytosol	78.21	73.42
Os06t0665800-01	Rice	cytosol	77.99	72.78
Zm00001d053783_P001	Maize	plasma membrane	77.56	72.75
TraesCS7D01G467100.1	Wheat	cytosol	77.78	72.73
TraesCS7A01G480100.1	Wheat	cytosol	77.67	72.63
TraesCS7B01G382300.1	Wheat	cytosol	77.56	72.53
Os02t0172600-00	Rice	cytosol	77.35	72.33
TraesCS6D01G146500.1	Wheat	cytosol	77.03	72.24
TraesCS6A01G156900.1	Wheat	cytosol	76.92	72.22
KXG20553	Sorghum	plasma membrane	77.46	72.0
TraesCS6B01G184800.1	Wheat	cytosol	73.82	71.09
HORVU7Hr1G108890.1	Barley	cytosol, mitochondrion	75.32	68.92
VIT_01s0011g01360.t01	Wine grape	cytosol	72.76	68.1
KRH37212	Soybean	cytosol	71.15	67.55
KRH12191	Soybean	cytosol	70.94	66.67
CDY26408	Canola	golgi, nucleus, plasma membrane	12.18	65.9
KRH58516	Soybean	cytosol	69.98	65.9
Zm00001d046953_P002	Maize	cytosol, endoplasmic reticulum, plasma membrane	72.44	65.57
KRH42397	Soybean	cytosol	69.23	65.19
CDY67984	Canola	cytosol, peroxisome, plasma membrane	16.99	64.9
Solyc02g068490.2.1	Tomato	cytosol	69.44	64.81
PGSC0003DMT400024409	Potato	cytosol	69.02	64.47
CDY50771	Canola	cytosol	68.16	64.19
CDY39400	Canola	cytosol	68.38	64.06
AT5G44790.1	Thale cress	cytosol	68.48	64.04
Bra025102.1-P	Field mustard	cytosol	67.84	63.69
Bra027573.1-P	Field mustard	cytosol	66.56	62.18
CDY69037	Canola	cytosol	36.65	58.73
CDY67659	Canola	cytosol	36.75	57.82
HORVU6Hr1G031960.1	Barley	plastid	34.19	55.75
GSMUA_Achr5P12290_001	Banana	plasma membrane	32.69	54.64
GSMUA_Achr5P12300_001	Banana	cytosol	38.14	44.79
GSMUA_Achr3P11880_001	Banana	cytosol	41.77	43.2
GSMUA_Achr1P00300_001	Banana	cytosol	39.64	42.21
GSMUA_Achr7P12640_001	Banana	cytosol	27.99	31.38
GSMUA_Achr8P30620_001	Banana	cytosol	25.64	29.85
GSMUA_Achr4P30180_001	Banana	plasma membrane	22.33	27.36
GSMUA_Achr5P22660_001	Banana	plasma membrane	21.9	25.09
GSMUA_Achr5P21940_001	Banana	extracellular, plasma membrane	22.44	22.46
GSMUA_Achr8P24660_001	Banana	cytosol	21.37	21.25
GSMUA_Achr9P16140_001	Banana	plastid	17.63	19.16

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829	GO:GO:0030001
GO:GO:0046872	GO:GO:0099132	EnsemblPlantsGene:GSMUA_Achr5G26800_001	EnsemblPlants:GSMUA_Achr5P26800_001	EnsemblPlants:GSMUA_Achr5T26800_001	InterPro:HAD-like_sf
InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS	InterPro:IPR006121
InterPro:IPR023214	InterPro:IPR023299	UniProt:M0T205	InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00403
PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00942	ScanProsite:PS00154	ScanProsite:PS01047	PFscan:PS50846
PANTHER:PTHR43520	PANTHER:PTHR43520:SF14	InterPro:P_typ_ATPase	SUPFAM:SSF55008	SUPFAM:SSF56784	SUPFAM:SSF81653
SUPFAM:SSF81665	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI0002949DB4
SEG:seg	:	:	:	:	:

Description

Copper-transporting ATPase RAN1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G26800_001]

Coordinates

chr5:-:27497289..27505076

Molecular Weight (calculated)

100513.0 Da

IEP (calculated)

4.841

GRAVY (calculated)

0.302

Length

936 amino acids

Sequence
(BLAST)

001: MAPNLRDIQL SSAAGRRGIS ARGDDGDLED VRLLDSYDEE EAAALPEWTG REEADKGVRR IQVRVTGMTC SACTGAVEGA ISALPGVARA SVSLLQNKAH
101: VVFDPNLVED VDIRDAIEDA GFEAEVLPDS SNSQMRSQKT LSGQFTIGGM TCSACVNSIE GILSKLPGVK RAVVALATSL GEVEYDPSVI TKDEIVHAIE
201: DAGFDAAFLQ SNEQDKVLSI VDAIEKGSNG KLKASVQSPY TLVTSNHVEE ASKMLRLFLS SLILSIPVFF IRMVCPRIGF LNSFLLIHCG PFLLRDLLKW
301: ILVSIVQFVI GKRFYVAAYK ALRHWSTNMD VLVVLGTSAS YFYSVGALFY GAFTGFRPPI YFETSAMIIT FVLLGKYLEV VAKGKTSDAI KKLVELAPAT
401: ALLLVKDEEG RYMGEREIDA LLIQPGDILK VLPGSKIPSD GIVTWGASHV DESMVTGESE PIPKEVSSAV VGGTMNLNGA LHIQATRVGS NTVLSQIISL
501: VETAQMSKAP IQKFADYVAS IFVPIVITIS LLTFLGWFLC GLLGAYPDSW VEESSNCFVF SLMFSISVVV IACPCALGLA TPTAVMVATG VGASHGVLIK
601: GGDALERAQN VHYVIFDKTG TLTQGKAAVT TAKVFTEMEL ADFLTLVASA EASSEHPLAR AILDYAYHYN FFDKLPTVEG ATKQSREEIL SEWLLEAIEF
701: SALPGRGVQC LIDEKKVLVG NRALLAENGV TVPMEAENFL IDLEVNAKTG ILVAYDGSFI GLLGIADPLK REAAVVVEGI KKMGVHPVMV TGDNWRTAQA
801: VAKEVGIEDV RAEVMPAGKA DVIRSLQKDG SIVAMVGDGI NDSPALAAAD VGMAIGAGTD IAIEAADYVL VRNSLEDVIT AIDLSRKTFA RIRLRMPPWL
901: AGACMAFSSV SVVCSSLLLR RYRKPRLTTI LQITVE

Best Arabidopsis Sequence Match ( AT5G44790.1 )
(BLAST)

0001: MAPSRRDLQL TPVTGGSSSQ ISDMEEVGLL DSYHNEANAD DILTKIEEGR DVSGLRKIQV GVTGMTCAAC SNSVEAALMN VNGVFKASVA LLQNRADVVF
0101: DPNLVKEEDI KEAIEDAGFE AEILAEEQTQ ATLVGQFTIG GMTCAACVNS VEGILRDLPG VKRAVVALST SLGEVEYDPN VINKDDIVNA IEDAGFEGSL
0201: VQSNQQDKLV LRVDGILNEL DAQVLEGILT RLNGVRQFRL DRISGELEVV FDPEVVSSRS LVDGIEEDGF GKFKLRVMSP YERLSSKDTG EASNMFRRFI
0301: SSLVLSIPLF FIQVICPHIA LFDALLVWRC GPFMMGDWLK WALVSVIQFV IGKRFYVAAW RALRNGSTNM DVLVALGTSA SYFYSVGALL YGAVTGFWSP
0401: TYFDASAMLI TFVLLGKYLE SLAKGKTSDA MKKLVQLTPA TAILLTEGKG GKLVGEREID ALLIQPGDTL KVHPGAKIPA DGVVVWGSSY VNESMVTGES
0501: VPVSKEVDSP VIGGTINMHG ALHMKATKVG SDAVLSQIIS LVETAQMSKA PIQKFADYVA SIFVPVVITL ALFTLVGWSI GGAVGAYPDE WLPENGTHFV
0601: FSLMFSISVV VIACPCALGL ATPTAVMVAT GVGATNGVLI KGGDALEKAH KVKYVIFDKT GTLTQGKATV TTTKVFSEMD RGEFLTLVAS AEASSEHPLA
0701: KAIVAYARHF HFFDESTEDG ETNNKDLQNS GWLLDTSDFS ALPGKGIQCL VNEKMILVGN RKLMSENAIN IPDHVEKFVE DLEESGKTGV IVAYNGKLVG
0801: VMGIADPLKR EAALVVEGLL RMGVRPIMVT GDNWRTARAV AKEVGIEDVR AEVMPAGKAD VIRSLQKDGS TVAMVGDGIN DSPALAAADV GMAIGAGTDV
0901: AIEAADYVLM RNNLEDVITA IDLSRKTLTR IRLNYVFAMA YNVVSIPIAA GVFFPVLRVQ LPPWAAGACM ALSSVSVVCS SLLLRRYKKP RLTTVLKITT
1001: E

Arabidopsis Description

RAN1Copper-transporting ATPase RAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.