Factsheet for TraesCS6D01G146500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G335400.1
TraesCS7B01G247000.1
TraesCS7D01G342900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44790.1	TraesCS7A01G335400.1	AT1G66240.1	17223078
AT5G44790.1	TraesCS7B01G247000.1	AT1G66240.1	17223078
AT5G44790.1	TraesCS7D01G342900.1	AT1G66240.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G156900.1	Wheat	cytosol	98.6	98.7
TraesCS6B01G184800.1	Wheat	cytosol	96.09	98.66
Os02t0172600-00	Rice	cytosol	87.58	87.31
EES06348	Sorghum	cytosol	86.87	86.96
Zm00001d053783_P001	Maize	plasma membrane	85.97	85.97
TraesCS7D01G467100.1	Wheat	cytosol	82.97	82.72
HORVU6Hr1G031960.1	Barley	plastid	46.59	81.01
GSMUA_Achr8P06970_001	Banana	cytosol	73.65	77.86
GSMUA_Achr5P26800_001	Banana	cytosol	72.24	77.03
CDY67984	Canola	cytosol, peroxisome, plasma membrane	17.43	71.02
VIT_01s0011g01360.t01	Wine grape	cytosol	70.24	70.1
KRH37212	Soybean	cytosol	68.94	69.78
KRH12191	Soybean	cytosol	69.54	69.68
KRH58516	Soybean	cytosol	68.94	69.22
KRH42397	Soybean	cytosol	68.34	68.61
AT5G44790.1	Thale cress	cytosol	68.64	68.43
Solyc02g068490.2.1	Tomato	cytosol	68.64	68.3
CDY50771	Canola	cytosol	67.94	68.21
PGSC0003DMT400024409	Potato	cytosol	68.34	68.06
CDY39400	Canola	cytosol	67.84	67.77
Bra025102.1-P	Field mustard	cytosol	67.33	67.4
Bra027573.1-P	Field mustard	cytosol	65.53	65.27
CDY26408	Canola	golgi, nucleus, plasma membrane	11.22	64.74
CDY69037	Canola	cytosol	35.47	60.62
CDY67659	Canola	cytosol	35.57	59.66
TraesCS2D01G407800.5	Wheat	plastid	45.69	45.6
TraesCS6D01G153600.1	Wheat	cytosol	43.99	44.08
TraesCS7D01G237500.1	Wheat	plastid	28.86	30.25
TraesCS4D01G292300.2	Wheat	plastid	25.95	29.13
TraesCS5D01G392700.1	Wheat	plasma membrane	21.24	24.85
TraesCS7D01G412800.1	Wheat	plasma membrane	21.24	22.43
TraesCS7D01G412400.1	Wheat	plasma membrane	21.54	21.44
TraesCS7D01G428700.1	Wheat	plastid	17.54	21.19

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829	GO:GO:0030001
GO:GO:0046872	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:Heavy-metal-associated_CS	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	InterPro:P-typ_ATPase_IB	PFAM:PF00122
PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00942	ScanProsite:PS00154	ScanProsite:PS01047
PFscan:PS50846	PANTHER:PTHR43520	PANTHER:PTHR43520:SF14	InterPro:P_typ_ATPase	SUPFAM:SSF55008	SUPFAM:SSF56784
SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS6D01G146500	EnsemblPlants:TraesCS6D01G146500.1	TIGR:cd00371	TIGR:cd02094	SEG:seg	:

Description

No Description!

Coordinates

chr6D:-:117414609..117419642

Molecular Weight (calculated)

107156.0 Da

IEP (calculated)

5.263

GRAVY (calculated)

0.297

Length

998 amino acids

Sequence
(BLAST)

001: MAHLQLTAVA GGRDDEMEEV ALLGSYGEAE GPSSRKGQEE EEAGMRRAQV RVTGMTCSAC TGAVEAALSA RRGVRSAAVS LLQNRAHVVF DPALAKEEDI
101: VEAIEDAGFE AEILPDSAVS QPKSQKALSG QFRIGGMTCA ACVNSVEGIL KKLPGVNRAV VALATSLGEV EYDPTAISKD EIVQAIEDAG FEAALVQSSE
201: QDKALLGLIG LHTERDVNLL YDILRKTEGL RQFDVNSVRA EVEITFDPEV VGLRSVVDII DMESSGRLKA HVQNPYVRSS SNDAQEASKM LHLLRSSLFL
301: SIQVFFMRMV CPHISFINSF LLMHCGPFRI GDLLKWMLVS VVQFVVGKRF YVAAYRALRH GSTNMDVLVV LGTTATYVYS VCALLYGAFT GFHPPMYFET
401: SAMIITFVLL GKYLEVLAKG RTSDAIKKLV ELVPATAILL LKYKDGKYAG EKEIDALLIQ PGDVLKVLPG SKIPADGIVT WGTSHVDESM VTGESASICK
501: EVSSSVIGGT MNLNGILHIQ AAKVGSGTVL SQIISLVETA QMSKAPIQKF ADYVAGIFVP IVITLSLLTF CTWFVCGTLG AYPNSWVSET SNCFVFSLMF
601: SISVVVIACP CALGLATPTA VMVATGVGAN HGVLVKGGDA LERAQNVNYI IFDKTGTLTQ GKATVTTTKV FSGMDVGDFL TLVASAEASS EHPLAKAILD
701: YAFHFHFFGK LPSSKDDVKK RKEDAFSQWL LEVADFSALP GKGVQCLING KMILVGNRTL ISENGVNIPE EAESFLVDME LNAKTGILVA YDGDFIGLMG
801: VTDPLKREAA VVIEGLKKMG IYPVMVTGDN WRTALAVAKE IGIEDVRAEV MPAGKADVIR SFQKDGSVVA MVGDGINDSP ALAAADVGMA IGAGTDIAIE
901: AADYVLVRNN LEDVITAIDL SRKTFSRIRW NYFFAMAYNI VAIPVAAGAL FPFTGLQMPP WLAGACMAFS SVSVVCSSLL LRRYRKPRLT TVLQITVE

Best Arabidopsis Sequence Match ( AT5G44790.1 )
(BLAST)

0001: MAPSRRDLQL TPVTGGSSSQ ISDMEEVGLL DSYHNEANAD DILTKIEEGR DVSGLRKIQV GVTGMTCAAC SNSVEAALMN VNGVFKASVA LLQNRADVVF
0101: DPNLVKEEDI KEAIEDAGFE AEILAEEQTQ ATLVGQFTIG GMTCAACVNS VEGILRDLPG VKRAVVALST SLGEVEYDPN VINKDDIVNA IEDAGFEGSL
0201: VQSNQQDKLV LRVDGILNEL DAQVLEGILT RLNGVRQFRL DRISGELEVV FDPEVVSSRS LVDGIEEDGF GKFKLRVMSP YERLSSKDTG EASNMFRRFI
0301: SSLVLSIPLF FIQVICPHIA LFDALLVWRC GPFMMGDWLK WALVSVIQFV IGKRFYVAAW RALRNGSTNM DVLVALGTSA SYFYSVGALL YGAVTGFWSP
0401: TYFDASAMLI TFVLLGKYLE SLAKGKTSDA MKKLVQLTPA TAILLTEGKG GKLVGEREID ALLIQPGDTL KVHPGAKIPA DGVVVWGSSY VNESMVTGES
0501: VPVSKEVDSP VIGGTINMHG ALHMKATKVG SDAVLSQIIS LVETAQMSKA PIQKFADYVA SIFVPVVITL ALFTLVGWSI GGAVGAYPDE WLPENGTHFV
0601: FSLMFSISVV VIACPCALGL ATPTAVMVAT GVGATNGVLI KGGDALEKAH KVKYVIFDKT GTLTQGKATV TTTKVFSEMD RGEFLTLVAS AEASSEHPLA
0701: KAIVAYARHF HFFDESTEDG ETNNKDLQNS GWLLDTSDFS ALPGKGIQCL VNEKMILVGN RKLMSENAIN IPDHVEKFVE DLEESGKTGV IVAYNGKLVG
0801: VMGIADPLKR EAALVVEGLL RMGVRPIMVT GDNWRTARAV AKEVGIEDVR AEVMPAGKAD VIRSLQKDGS TVAMVGDGIN DSPALAAADV GMAIGAGTDV
0901: AIEAADYVLM RNNLEDVITA IDLSRKTLTR IRLNYVFAMA YNVVSIPIAA GVFFPVLRVQ LPPWAAGACM ALSSVSVVCS SLLLRRYKKP RLTTVLKITT
1001: E

Arabidopsis Description

RAN1Copper-transporting ATPase RAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.