Factsheet for TraesCS6D01G153600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G158900.1	Wheat	plastid	97.39	99.59
TraesCS6B01G192400.1	Wheat	cytosol, plastid	97.39	98.98
HORVU6Hr1G033380.2	Barley	cytosol	96.99	97.87
EES04697	Sorghum	cytosol, plastid	85.94	87.89
Zm00001d015829_P003	Maize	plasma membrane	86.25	87.65
GSMUA_Achr3P11880_001	Banana	cytosol	64.96	71.49
VIT_06s0004g01890.t01	Wine grape	plasma membrane	69.48	70.9
Solyc11g062120.1.1	Tomato	cytosol, peroxisome, plasma membrane	20.88	70.03
KRH66147	Soybean	cytosol	65.36	68.24
Solyc11g062100.1.1	Tomato	cytosol, peroxisome, plasma membrane	45.88	67.7
KRH07428	Soybean	cytosol	61.65	67.25
TraesCS2D01G407800.5	Wheat	plastid	52.41	52.2
TraesCS6D01G146500.1	Wheat	cytosol	44.08	43.99
TraesCS7D01G467100.1	Wheat	cytosol	43.57	43.36
TraesCS4D01G292300.2	Wheat	plastid	26.0	29.13
TraesCS7D01G237500.1	Wheat	plastid	26.81	28.05
TraesCS5D01G392700.1	Wheat	plasma membrane	21.89	25.56
TraesCS7D01G428700.1	Wheat	plastid	18.57	22.4
TraesCS7D01G412800.1	Wheat	plasma membrane	21.08	22.22
TraesCS7D01G412400.1	Wheat	plasma membrane	21.89	21.73

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829
GO:GO:0030001	GO:GO:0046872	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	InterPro:P-typ_ATPase_IB
PFAM:PF00122	PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00942	ScanProsite:PS00154
ScanProsite:PS01047	PFscan:PS50846	PANTHER:PTHR24093	PANTHER:PTHR24093:SF417	InterPro:P_typ_ATPase	SUPFAM:SSF55008
SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G153600	EnsemblPlants:TraesCS6D01G153600.1	TIGR:cd00371	TIGR:cd02094	SEG:seg

Description

No Description!

Coordinates

chr6D:-:127383076..127387986

Molecular Weight (calculated)

107417.0 Da

IEP (calculated)

5.340

GRAVY (calculated)

0.185

Length

996 amino acids

Sequence
(BLAST)

001: MLCYFHDVVL TNSATGMEQN GESHLKEPLL HAADGASAAA ARVSPRKERT TRKVMFNVRG MSCGSCAVSI ETVVAGLKGV ESIQVSTLQG QAVVQYSPEE
101: TDARTIKEAI EDINFEVDEL QEQEIAVCRL RIKGMACTSC SESIERALLM VPGVKKAAVG LALEEAKVHF DPNITSRDLL IEAIEDAGFG ADLISYGDDV
201: NKMHLKLEGV SSPEDTKLIQ SVLETVEGVN NVEWDTSGQT VTVAYDPYVT GPRLLIQRIQ DAAEPPKCFN ASLYSPPKQR EVERHHEIMS YRNQFLWSCL
301: FSVPVFLFAM VLPMLPPSGD WLFYKIYNNM TVGMLLRWLL CSPVQFIIGW RFYVGAYHAL KRGYSNMDVL VALGTNAAYF YSVYIIVKAL TSDTFEGQDL
401: FETSSMLVSF ILLGKYLEVV AKGKTSDALS KLTELAPETA VLLTLEKDGS VISEVEISTQ LLQRNDFIKI VPGEKVPVDG VVIKGQSHVN ESMITGEARP
501: IAKKPGDKVI GGTVNDNGFI IVKATHVGSE TALSQIVQLV EAAQLARAPV QRLADKISRF FVPTVVVAAF LTWLGWFIPG QLHLYPQQWI PKAMDSFELA
601: LQFGISVLVV ACPCALGLAT PTAVMVATGK GASLGVLIKG GNALEKAHKI KTIIFDKTGT LTKGKPSVVQ TKTFSKIPLL ELCDLTASAE ANSEHPLSKA
701: IVEYTKKLRE QYGSPSDHMM DSKDFEVHPG AGVSANVEGK LVLVGNKRLM QEFEAPMSSE VEEYMSEMED LARTCVLVAI DRVICGALAV SDPLKPEAGR
801: VISHLSSMGI TSIMVTGDNW ATAKSIAKQV GISTIFAEID PVGKAEKIKD LQTQGLAVAM VGDGVNDSPA LAAADVGMAI GAGTDVAIEA ADIVLMKSSL
901: VDVITAIDLS RKTLAKIRLN YVWALGYNVL GMPIAAGVLF PFTGIRLPPW LAGACMAASS VSVVCSSLLL QLYKKPLHVE EAPMTAGPGD GGSNLV

Best Arabidopsis Sequence Match ( AT1G63440.1 )
(BLAST)

001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV

Arabidopsis Description

HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.