Factsheet for TraesCS6B01G192400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plasma membrane, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G158900.1	Wheat	plastid	98.57	99.18
HORVU6Hr1G033380.2	Barley	cytosol	98.47	97.77
TraesCS6D01G153600.1	Wheat	cytosol	98.98	97.39
EES04697	Sorghum	cytosol, plastid	87.35	87.89
Zm00001d015829_P003	Maize	plasma membrane	87.55	87.55
GSMUA_Achr3P11880_001	Banana	cytosol	66.02	71.49
VIT_06s0004g01890.t01	Wine grape	plasma membrane	70.82	71.11
Solyc11g062120.1.1	Tomato	cytosol, peroxisome, plasma membrane	21.33	70.37
KRH66147	Soybean	cytosol	66.53	68.34
Solyc11g062100.1.1	Tomato	cytosol, peroxisome, plasma membrane	46.63	67.7
KRH07428	Soybean	cytosol	62.76	67.36
TraesCS2B01G429200.2	Wheat	mitochondrion	53.06	52.31
TraesCS7B01G382300.1	Wheat	cytosol	44.39	43.46
TraesCS6B01G184800.1	Wheat	cytosol	42.24	42.59
TraesCS4B01G293600.3	Wheat	mitochondrion, plasma membrane	23.98	32.02
TraesCS7B01G135300.1	Wheat	plastid	27.24	28.05
TraesCS7B01G320900.1	Wheat	plasma membrane	21.53	27.55
TraesCS5B01G388000.1	Wheat	plasma membrane	22.14	26.18
TraesCS7B01G337700.1	Wheat	extracellular, plasma membrane	10.0	24.38
TraesCS7B01G320100.2	Wheat	plasma membrane	22.14	21.21

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829
GO:GO:0030001	GO:GO:0046872	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	InterPro:P-typ_ATPase_IB
PFAM:PF00122	PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00942	ScanProsite:PS00154
ScanProsite:PS01047	PFscan:PS50846	PANTHER:PTHR24093	PANTHER:PTHR24093:SF417	InterPro:P_typ_ATPase	SUPFAM:SSF55008
SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G192400	EnsemblPlants:TraesCS6B01G192400.1	TIGR:cd00371	TIGR:cd02094	SEG:seg

Description

No Description!

Coordinates

chr6B:-:226400143..226404875

Molecular Weight (calculated)

105633.0 Da

IEP (calculated)

5.343

GRAVY (calculated)

0.174

Length

980 amino acids

Sequence
(BLAST)

001: MERNGESHLK EPLLHAADGA SPASARVSPR KERTTRKVMF NVRGMSCGSC AVSIETVVAG LKGVESIQVS TLQGQAVVQY SPEETDARTI KEAIEDINFE
101: VDELQEQEIA VCRLRIKGMA CTSCSESIER ALLMVPGVKK AAVGLALEEA KVHFDPNITS RDLLIEAIED AGFGADLISY GDDVNKMHLK LEGVSSPEDT
201: KLIQSVLETV EGVNNVEWDT SGQTVTVAYD PDVTGPRLLI QRIQDAAEPP KCFNASLYSP PKQREVERHH EIMSYRNQFL WSCLFSVPVF LFAMVLPMLP
301: PSGDWLFYKI YNNMTVGMLL RWLLCSPVQF IIGWRFYVGA YHALKRGYSN MDVLVALGTN AAYFYSVYII VKALTSDTFE GQDLFETSSM LVSFILLGKY
401: LEVVAKGKTS DALSKLTELA PETAVLLTLE KDGSVISEVE ISTQLLQRND FIKIVPGEKV PVDGVVIKGQ SHVNESMITG EARPIAKKPG DKVIGGTVND
501: NGFIIVKATH VGSETALSQI VQLVEAAQLA RAPVQRLADK ISRFFVPAVV VAAFLTWLGW FIPGQLHLYP QQWIPKAMDS FELALQFGIS VLVVACPCAL
601: GLATPTAVMV ATGKGASLGV LIKGGNALEK AHKIKTIIFD KTGTLTKGKP SVVQTKTFSK IPLLELCDLT ASAEANSEHP LSKAIVEYTK KLREQYGSPS
701: DHMMDSKDFE VHPGAGVSAN VEGKLVLVGN KRLMQEFEAP MSSEVEEYMS EMEDLARTCV LVAIDRVICG ALAVSDPLKP EAGRVISHLS SMGITSIMVT
801: GDNWATAKSI AKQVGISTVF AEIDPVGKAE KIKDLQTQGL AVAMVGDGVN DSPALAAADV GMAIGAGTDV AIEAADIVLM KSSLVDVITA IDLSRKTLAK
901: IRLNYVWALG YNVLGMPIAA GVLFPFTGIR LPPWLAGACM AASSVSVVCS SLLLQLYKKP LHVEDVPIPA GPGDGGSNLV

Best Arabidopsis Sequence Match ( AT1G63440.1 )
(BLAST)

001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV

Arabidopsis Description

HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.