Factsheet for VIT_06s0004g01890.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
plasma membrane 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g062120.1.1	Tomato	cytosol, peroxisome, plasma membrane	23.26	76.43
KRH66147	Soybean	cytosol	71.82	73.48
Solyc11g062100.1.1	Tomato	cytosol, peroxisome, plasma membrane	50.31	72.74
KRH07428	Soybean	cytosol	67.42	72.07
EES04697	Sorghum	cytosol, plastid	71.21	71.36
Zm00001d015829_P003	Maize	plasma membrane	71.52	71.22
TraesCS6B01G192400.1	Wheat	cytosol, plastid	71.11	70.82
TraesCS6A01G158900.1	Wheat	plastid	70.59	70.74
HORVU6Hr1G033380.2	Barley	cytosol	71.21	70.42
TraesCS6D01G153600.1	Wheat	cytosol	70.9	69.48
GSMUA_Achr3P11880_001	Banana	cytosol	64.34	69.39
VIT_02s0025g03640.t01	Wine grape	golgi, peroxisome, plasma membrane	31.86	62.7
VIT_01s0011g01360.t01	Wine grape	cytosol	47.75	46.6
VIT_12s0142g00330.t01	Wine grape	golgi, plasma membrane	16.39	36.12
VIT_04s0008g01960.t01	Wine grape	plastid	27.66	30.41
VIT_12s0142g00400.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	8.4	29.93
VIT_11s0103g00370.t01	Wine grape	plasma membrane	20.7	28.13
VIT_02s0025g03630.t01	Wine grape	cytosol	55.43	27.94
VIT_07s0129g01040.t01	Wine grape	plastid	18.95	22.32

Protein Annotations

EntrezGene:100265637	wikigene:100265637	Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10
Gene3D:3.40.50.1000	EMBL:AM473693	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf
ProteinID:CAN79386	ProteinID:CAN79386.1	ProteinID:CCB43721	ProteinID:CCB43721.1	UniProt:F6GU79	EMBL:FN594951
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005388	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887
GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019829	GO:GO:0030001	GO:GO:0043231	GO:GO:0046872	GO:GO:0070588	GO:GO:0099132
InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS
InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	EntrezGene:LOC100265637	wikigene:LOC100265637	InterPro:P-typ_ATPase_IB
PFAM:PF00122	PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154
ScanProsite:PS01047	PFscan:PS50846	PANTHER:PTHR24093	PANTHER:PTHR24093:SF417	InterPro:P_typ_ATPase	SUPFAM:SSF55008
SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525
TMHMM:TMhelix	UniParc:UPI000198367F	ArrayExpress:VIT_06s0004g01890	EnsemblPlantsGene:VIT_06s0004g01890	EnsemblPlants:VIT_06s0004g01890.t01	RefSeq:XP_002282923
RefSeq:XP_002282923.1	RefSeq:XP_010651256.1	RefSeq:XP_010651257.1	RefSeq:XP_010651258.1	RefSeq:XP_010651259.1	RefSeq:XP_019076246.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:2343996..2351124

Molecular Weight (calculated)

105364.0 Da

IEP (calculated)

5.095

GRAVY (calculated)

0.219

Length

976 amino acids

Sequence
(BLAST)

001: MEINGKDELK LPLLQPLDGV VVTASQPSTI IDKKIKTVMF KIGNIACASC ATSIESVLLE LNGVESVMVS VLQGQAAVKY IPELITANAI KEAIKDAGFP
101: VDDLPEQEIA VCRLRIKGMA CTSCSESVEH ALSLVDGVKK AVVGLALEEA KVHFDPSITD FNHIVEAVED AGFGADVINS GNDVNKVHLK LEGISSEEDI
201: NIIQSYLESV EGVNDVEMDL AENKVTVSYD PDLTGPRSLI CCIEKAGQGS NFYHATLYSP PRQRETERQQ EIWMYRNQFI WSCLFSIPVF IFAMVLPMLH
301: PYGNWLDFKV QNMLTVGMLL RWILCTPVQF IIGRRFYVGS YHALRRRSAN MEVLVALGTN AAYFYSVYIV IKALTTDMFE GNDFFETSAM LISFILLGKY
401: LEVVAKGKTS DALAKLTDLA PDTAHLIALD DEDNVISDIE ISTQLIQRND ILKIVPGEKV PVDGIVVNGQ SHVNESMITG EARPIAKKPG DKVIGGTVNE
501: NGCILVKATH VGSETALSQI VQLVEAAQLA RAPVQKLADQ ISRFFVPTVV VVAFITWVAW FTLGELGSYP KHWMPKGMDG FELALQFAIS VLVVACPCAL
601: GLATPTAVMV ATGKGASLGV LIKGGNALEK AHKVKTIVFD KTGTLTVGKP VVVSAVLFSS FSMEEFCDMT TAAEANSEHP LAKAVVEYAK RLRQKFGPQT
701: EQMTDIKEFE VHPGAGVSGK VGDKLVLVGN KRLMQDSSVP VSPEVENHIA ETENLARTCV LVAINGKVAG AFAVTDPVKP EAGRVISFLH SMDISTVMMT
801: GDNWATATAI AKEVGIKEVY AETDPLGKAE RIKNLQMKGM TVAMVGDGIN DSPALVAADV GMAIGAGTDV AIEAADIVLI KSNLEDVITA LDLSRKTMSR
901: IRLNYVWALG YNVLAMPVAA GILFPLDGIR IPPWLAGACM AASSVSVVCS SLLLQSYKKP LHVEDARDVS HNSNSK

Best Arabidopsis Sequence Match ( AT1G63440.1 )
(BLAST)

001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV

Arabidopsis Description

HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.