CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
plastid 3
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015829_P003	Maize	plasma membrane	96.2	95.61
TraesCS6B01G192400.1	Wheat	cytosol, plastid	87.89	87.35
TraesCS6A01G158900.1	Wheat	plastid	87.27	87.27
HORVU6Hr1G033380.2	Barley	cytosol	87.99	86.83
TraesCS6D01G153600.1	Wheat	cytosol	87.89	85.94
Solyc11g062120.1.1	Tomato	cytosol, peroxisome, plasma membrane	22.18	72.73
GSMUA_Achr3P11880_001	Banana	cytosol	66.94	72.04
VIT_06s0004g01890.t01	Wine grape	plasma membrane	71.36	71.21
KRH66147	Soybean	cytosol	68.28	69.71
Solyc11g062100.1.1	Tomato	cytosol, peroxisome, plasma membrane	47.74	68.89
KRH07428	Soybean	cytosol	64.07	68.35
EES11247	Sorghum	mitochondrion	56.37	54.79
KXG26864	Sorghum	cytosol, plasma membrane, plastid	55.85	50.28
EES06348	Sorghum	cytosol	46.82	45.74
KXG20553	Sorghum	plasma membrane	46.2	44.69
OQU81022	Sorghum	cytosol	26.59	32.91
KXG40056	Sorghum	plastid	26.39	28.56
EER96099	Sorghum	cytosol	22.38	24.36
KXG20697	Sorghum	plastid	19.3	22.71
EER96100	Sorghum	cytosol	20.94	21.86
EER90320	Sorghum	plasma membrane	21.66	19.74

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	EntrezGene:8082897
InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	UniProt:C5XXH4	ncoils:Coil
EnsemblPlants:EES04697	ProteinID:EES04697	ProteinID:EES04697.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005388	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829	GO:GO:0030001	GO:GO:0043231
GO:GO:0046872	GO:GO:0070588	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd
InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299
InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120
ScanProsite:PS00154	ScanProsite:PS01047	PFscan:PS50846	PANTHER:PTHR24093	PANTHER:PTHR24093:SF417	InterPro:P_typ_ATPase
EnsemblPlantsGene:SORBI_3004G079900	SUPFAM:SSF55008	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR00003
TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI0001A85756	RefSeq:XP_002451721.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:6569317..6574931

Molecular Weight (calculated)

105229.0 Da

IEP (calculated)

5.347

GRAVY (calculated)

0.133

Length

974 amino acids

Sequence
(BLAST)

001: MEQNGESHLK DPLLPATSSA SPAGASPRKE RKTRKVMFSV RGMSCASCAV SIETVVAGLK GVESIQVSPL QGQAVVQYRP EETDTRTIKE AIEDLNFEVD
101: ELQEQEIAVC RLRIKGMACT SCSESVERAL QMVPGVKKAA VGLALEEAKV HYDPNVTSRD LIIEAVEDAG FGADPISSGD DVNKVHLKLE GVNSPEDTKL
201: VQSVLEAAEG VNNVEWDTVE QTIKVAYDPD ITGPRLLIQC IQNAAQPPKC FTATLHSPPK QREAERNHEI RNYRNQFLWS CLFSVPVFLF SMVLPMLSPF
301: GDWLMYRICN NMTIGMLLRW LLCSPVQFIV GWRFYVGAYH ALKRGYSNMD VLVALGTNAA YFYSVYIVLK AITSDSFEGQ DFFETSAMLI SFILLGKYLE
401: VMAKGKTSDA LSKLTELAPE TACLLTFDKD GNAISETEIS TQLLQRNDVI KIVPGTKVPV DGVVIKGQSH VNESMITGEA RPISKKPGDR VIGGTVNDNG
501: CIIVKATHVG SETALSQIVQ LVEAAQLARA PVQKLADKIS RFFVPTVVVV AFLTWLGWFI PGQLHLLPQQ WIPKAMDSFE LALQFGISVL VVACPCALGL
601: ATPTAVMVAT GKGASQGVLI KGGNALEKAH KIKAIIFDKT GTLTVGKPSV VQTKIFSKIP LLELCDLAAG AEANSEHPLS KAIVEHTKKL KEQYGAHSDH
701: MMESRDFEVH PGAGVSAQVE GRLVLVGNKR LMQEFEVPLS PEVEAYMSET EELARTCVLV AIDKIICGAL AVSDPLKPEA GQVISYLKSM DISSIMVTGD
801: NWATAKSIAK EVGISQVFAE IDPVGKAEKI KDLQMQGLTV AMVGDGVNDS PALAAADVGM AIGAGTDVAI EAADIVLMKS SLEDVITAID LSRKTLSRIR
901: LNYVWALGYN VLGMPIAAGV LFPFTGIRLP PWLAGACMAA SSVSVVCSSL LLQLYKKPLH VEDAPRPEDG SDLV

Best Arabidopsis Sequence Match ( AT1G63440.1 )
(BLAST)

001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV

Arabidopsis Description

HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.