CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES17440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63440.1	EES17440	AT1G66240.1	16367966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002708_P001	Maize	mitochondrion	94.61	94.89
HORVU2Hr1G097010.1	Barley	plasma membrane	61.18	91.22
Os04t0556000-01	Rice	plastid	87.92	87.92
TraesCS2B01G429200.2	Wheat	mitochondrion	87.13	87.83
TraesCS2D01G407800.5	Wheat	plastid	86.73	86.9
TraesCS2A01G410400.3	Wheat	mitochondrion	86.33	85.56
GSMUA_Achr5P12290_001	Banana	plasma membrane	45.21	80.89
KXG26864	Sorghum	cytosol, plasma membrane, plastid	86.23	79.85
PGSC0003DMT400032161	Potato	cytosol, plasma membrane, vacuole	10.38	78.79
VIT_02s0025g03640.t01	Wine grape	golgi, peroxisome, plasma membrane	37.52	75.81
Solyc08g080870.2.1	Tomato	cytosol	68.96	72.43
GSMUA_Achr5P12300_001	Banana	cytosol	55.49	69.76
CDX91834	Canola	cytosol, peroxisome, plasma membrane	59.28	69.23
KRH27938	Soybean	plasma membrane	19.46	68.66
AT1G63440.1	Thale cress	mitochondrion	67.17	67.64
KRH77529	Soybean	cytosol	63.97	65.61
CDY50396	Canola	cytosol	63.27	65.16
CDY49160	Canola	cytosol	62.57	64.44
Bra003110.1-P	Field mustard	cytosol	62.67	64.28
GSMUA_Achr1P00300_001	Banana	cytosol	55.99	63.82
CDY34353	Canola	mitochondrion	65.67	63.76
CDY25498	Canola	mitochondrion	65.77	63.73
CDX93870	Canola	endoplasmic reticulum, plasma membrane	44.81	61.51
EES04697	Sorghum	cytosol, plastid	54.79	56.37
Bra027641.1-P	Field mustard	mitochondrion	66.87	56.21
KXG20553	Sorghum	plasma membrane	48.3	48.06
EES06348	Sorghum	cytosol	47.31	47.54
VIT_02s0025g03630.t01	Wine grape	cytosol	70.16	36.31
OQU81022	Sorghum	cytosol	26.35	33.55
KXG40056	Sorghum	plastid	25.25	28.11
EER96099	Sorghum	cytosol	20.86	23.35
KXG20697	Sorghum	plastid	18.46	22.34
EER96100	Sorghum	cytosol	19.76	21.22
EER90320	Sorghum	plasma membrane	19.96	18.71

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	EntrezGene:8055978
ProteinID:AAT42168.1	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	EnsemblPlants:EES11247
ProteinID:EES11247	ProteinID:EES11247.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005388	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019829	GO:GO:0030001	GO:GO:0043231	GO:GO:0046872
GO:GO:0070588	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	InterPro:P-typ_ATPase_IB
PFAM:PF00122	PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00942	PRINTS:PR00943
ScanProsite:PS00154	ScanProsite:PS01047	PFscan:PS50846	PANTHER:PTHR24093	PANTHER:PTHR24093:SF417	InterPro:P_typ_ATPase
UniProt:Q6JAG2	EnsemblPlantsGene:SORBI_3006G173700	SUPFAM:SSF55008	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665
TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI00003B02B0	RefSeq:XP_002446919.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:52964529..52972943

Molecular Weight (calculated)

108743.0 Da

IEP (calculated)

6.178

GRAVY (calculated)

0.125

Length

1002 amino acids

Sequence
(BLAST)

0001: MASTRTLFLS CFHGGGAEVS RHLALRPRYP SNPRRPSRSA AVAGEGSEGG GSGGTTGDLE AAKGTAEKED EEEKVSVFAV TGMTCAACAG SVEKAVKRLP
0101: GIHDAAVDVL GGRAQVVFYP AFVSEEKIRE AIEDAGFEAK LINEEVREKN ILVCRLHIKG MTCTSCTSTV ESALQVLPGV QRASVALATE EAEIHYDRRI
0201: IAASQLIHAA EETGFEAILI TTGEDRSRID LKLDGLLTER LTMILKSSIQ ALPGVEDVKV DTELHKITVS YKPDQTGPRD LIEVIESATS GDVTASIYAE
0301: AEGREHHRHV EIKRYRQSFL WSLIFTIPVF LTSMVFMYIP VLKDGLEKKV VNMMSIGELL RWILSTPVQF VIGRKFYTGA YKAIRHGSPN MDVLIALGTN
0401: TAYFYSVYSV LRAATSENYM STDFFETSSM LISFILLGKY LEILAKGKTS EAIAKLMDLA PETATLLMYD NEGNVVGEKE IDSRLIQKND VIKVVPGGKV
0501: ASDGFVIWGQ SHVNESMITG ESRPVAKRKG DTVIGGTVNE NGVLHVRATF VGSETALAQI VRLVESAQMA KAPVQKFADK ISRVFVPLVI VLSLLTWLVW
0601: FLAGRFHGYP YSWIPSSMDS FQLALQFGIS VMVIACPCAL GLATPTAVMV ATGVGASQGV LIKGGQALES AQKVDCIVFD KTGTLTVGKP VVVNTRLFKN
0701: MVLREFFDYV AAAEDNSEHP LAKAIVEHAK KFHSEENHIW PEARDFISVP GHGVKAKVFD KSVIVGNKSF MLSLSIDIPM EASEILIEEE ENAHTCIIVA
0801: MDQEVVGIVS VSDPIKPNAH EVISYLKSMN VESIMVTGDN WGTANAIGKE VGIEKIIAEA KPDQKAEKVK ELQLSGKTVA MVGDGINDSP ALVSANLGLA
0901: IGAGTDVAIE AADIVLMKSN LEDVITAIDL SRKTFFRIRM NYVWALGYNI IGIPIAAGAL FPSTRFRLPP WVAGAAMAAS SVSVVCWSLL LRYYKSPKKF
1001: DN

Best Arabidopsis Sequence Match ( AT1G63440.1 )
(BLAST)

001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV

Arabidopsis Description

HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.