Factsheet for TraesCS2D01G407800.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plasma membrane, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G335400.1
TraesCS7B01G247000.1
TraesCS7D01G342900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63440.1	TraesCS7A01G335400.1	AT1G66240.1	16367966
AT1G63440.1	TraesCS7B01G247000.1	AT1G66240.1	16367966
AT1G63440.1	TraesCS7D01G342900.1	AT1G66240.1	16367966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G097010.1	Barley	plasma membrane	65.2	97.02
TraesCS2B01G429200.2	Wheat	mitochondrion	94.8	95.37
TraesCS2A01G410400.3	Wheat	mitochondrion	94.9	93.87
Zm00001d002708_P001	Maize	mitochondrion	87.3	87.39
Os04t0556000-01	Rice	plastid	87.2	87.03
EES11247	Sorghum	mitochondrion	86.9	86.73
GSMUA_Achr5P12290_001	Banana	plasma membrane	44.8	80.0
Zm00001d002705_P002	Maize	cytosol, plastid	82.5	79.63
KXG26864	Sorghum	cytosol, plasma membrane, plastid	84.3	77.91
PGSC0003DMT400032161	Potato	cytosol, plasma membrane, vacuole	10.2	77.27
VIT_02s0025g03640.t01	Wine grape	golgi, peroxisome, plasma membrane	37.6	75.81
Solyc08g080870.2.1	Tomato	cytosol	68.5	71.8
GSMUA_Achr5P12300_001	Banana	cytosol	55.8	70.01
CDX91834	Canola	cytosol, peroxisome, plasma membrane	58.8	68.53
KRH27938	Soybean	plasma membrane	19.2	67.61
AT1G63440.1	Thale cress	mitochondrion	66.8	67.14
KRH77529	Soybean	cytosol	64.1	65.61
GSMUA_Achr1P00300_001	Banana	cytosol	56.1	63.82
CDY50396	Canola	cytosol	61.9	63.62
CDY34353	Canola	mitochondrion	65.3	63.28
CDY25498	Canola	mitochondrion	65.4	63.25
CDY49160	Canola	cytosol	61.4	63.1
Bra003110.1-P	Field mustard	cytosol	61.4	62.85
CDX93870	Canola	endoplasmic reticulum, plasma membrane	44.5	60.96
Bra027641.1-P	Field mustard	mitochondrion	66.6	55.87
TraesCS6D01G153600.1	Wheat	cytosol	52.2	52.41
TraesCS7D01G467100.1	Wheat	cytosol	46.8	46.75
TraesCS6D01G146500.1	Wheat	cytosol	45.6	45.69
VIT_02s0025g03630.t01	Wine grape	cytosol	70.8	36.57
TraesCS4D01G292300.2	Wheat	plastid	25.8	29.02
TraesCS7D01G237500.1	Wheat	plastid	27.1	28.47
TraesCS5D01G392700.1	Wheat	plasma membrane	20.7	24.27
TraesCS7D01G428700.1	Wheat	plastid	18.3	22.16
TraesCS7D01G412800.1	Wheat	plasma membrane	20.4	21.59
TraesCS7D01G412400.1	Wheat	plasma membrane	20.8	20.74

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829	GO:GO:0030001
GO:GO:0046872	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:Heavy-metal-associated_CS	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	InterPro:P-typ_ATPase_IB	PFAM:PF00122
PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00942	PRINTS:PR00943	ScanProsite:PS00154
ScanProsite:PS01047	PFscan:PS50846	PANTHER:PTHR24093	PANTHER:PTHR24093:SF417	InterPro:P_typ_ATPase	SUPFAM:SSF55008
SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2D01G407800	EnsemblPlants:TraesCS2D01G407800.5	TIGR:cd00371	TIGR:cd02094	SEG:seg

Description

No Description!

Coordinates

chr2D:-:522990449..523000104

Molecular Weight (calculated)

108181.0 Da

IEP (calculated)

5.714

GRAVY (calculated)

0.166

Length

1000 amino acids

Sequence
(BLAST)

001: MAAATRSLFL TCFHSSGSDE SGHLTLRPRY PSMPRQPRAA AVAGEGGGGE GGSAAVDLEA AEEEEEEEKV AVFAVSGMTC AACAGSVEKA VKRLPGIHEA
101: AVDVLGGRVQ VAFYTALVSE EKIRETIEDV GFGAKLIDEE LKEKSILVCR LHIKGMTCTS CANTVESALQ AVPGVQRASV ALAIEEAEIR YNRRVVAAIQ
201: LVNAVEESGF EAILVTAGED RSRIDLKVDG ILNERSAMIV KSSVQALPGV EDIKIDTELQ KITISYKPDQ TGPRDLIEVI ESAGSGHIAV SIYPEADGRE
301: QHRNGEITRY RQSFLWSLLF TIPVFLTSMV FMYIPGLKEG LDKKVVNMMS IGELLRWILS TPVQFVIGRK FYTGAYKAMC HGSPNMDVLI ALGTNTAYFY
401: SVYSVLRAAT SENYVSTDFF ETSSMLISFI LLGKYLEILA KGKTSEAIAK LMDLAPETAT VLMYDKEGNV VSEKEIDSRL IQKNDVIKVI PGGKVASDGF
501: VIWGQSHVNE SMITGESRPV AKRKGDTVIG GTVNENGVLH VRATFVGSES ALAQIVRLVE SAQMAKAPVQ KFADQISKVF VPLVILLSFL TWLTWFLAGR
601: FHGYPSSWIP SSMDSFQLAL QFGISVMVIA CPCALGLATP TAVMVATGVG ASQGVLIKGG QALESAQKVD CIVFDKTGTL TIGKPIVVNT RLFKNMVLRE
701: FYDYVAAAEV NSEHPLAKAI VEHAKNFHSE ETHIWPEARD FISVTGHGVK AKISDKSVIV GNKSFMLSLD IDVPVEASEI LMEEEEKAHT GIIVAMDQEI
801: VGIISVSDPI KPNAHEVISY LKSMKVECIM VTGDNWGTAK AIGKEVGIEN IIAEAKPEQK AEKVKELQLS GKTVAMVGDG INDSPALVAA NVGMAIGAGT
901: DVAIEAADIV LMKSNLEDVI TAIDLSRKAF FRIRMNYVWA LGYNIIGIPI AAGVLFPSTR FRLPPWVAGA AMAASSVSVV CWSLLLRYYK RPLITQKRQT

Best Arabidopsis Sequence Match ( AT1G63440.1 )
(BLAST)

001: MATKLLSLTC IRKERFSERY PLVRKHLTRS RDGGGGSSSE TAAFEIDDPI SRAVFQVLGM TCSACAGSVE KAIKRLPGIH DAVIDALNNR AQILFYPNSV
101: DVETIRETIE DAGFEASLIE NEANERSRQV CRIRINGMTC TSCSSTIERV LQSVNGVQRA HVALAIEEAE IHYDPRLSSY DRLLEEIENA GFEAVLISTG
201: EDVSKIDLKI DGELTDESMK VIERSLEALP GVQSVEISHG TDKISVLYKP DVTGPRNFIQ VIESTVFGHS GHIKATIFSE GGVGRESQKQ GEIKQYYKSF
301: LWSLVFTVPV FLTAMVFMYI PGIKDLLMFK VINMLTVGEI IRCVLATPVQ FVIGWRFYTG SYKALRRGSA NMDVLIALGT NAAYFYSLYT VLRAATSPDF
401: KGVDFFETSA MLISFIILGK YLEVMAKGKT SQAIAKLMNL APDTAILLSL DKEGNVTGEE EIDGRLIQKN DVIKIVPGAK VASDGYVIWG QSHVNESMIT
501: GEARPVAKRK GDTVIGGTLN ENGVLHVKVT RVGSESALAQ IVRLVESAQL AKAPVQKLAD RISKFFVPLV IFLSFSTWLA WFLAGKLHWY PESWIPSSMD
601: SFELALQFGI SVMVIACPCA LGLATPTAVM VGTGVGASQG VLIKGGQALE RAHKVNCIVF DKTGTLTMGK PVVVKTKLLK NMVLREFYEL VAATEVNSEH
701: PLAKAIVEYA KKFRDDEENP AWPEACDFVS ITGKGVKATV KGREIMVGNK NLMNDHKVII PDDAEELLAD SEDMAQTGIL VSINSELIGV LSVSDPLKPS
801: AREAISILKS MNIKSIMVTG DNWGTANSIA REVGIDSVIA EAKPEQKAEK VKELQAAGHV VAMVGDGIND SPALVAADVG MAIGAGTDIA IEAADIVLMK
901: SNLEDVITAI DLSRKTFSRI RLNYVWALGY NLMGIPIAAG VLFPGTRFRL PPWIAGAAMA ASSVSVVCCS LLLKNYKRPK KLDHLEIREI QVERV

Arabidopsis Description

HMA5Probable copper-transporting ATPase HMA5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.