Factsheet for PGSC0003DMT400024409

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400050141

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44790.1	PGSC0003DMT400050141	AT3G56240.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g068490.2.1	Tomato	cytosol	98.0	97.91
VIT_01s0011g01360.t01	Wine grape	cytosol	79.34	79.5
KRH58516	Soybean	cytosol	76.75	77.36
KRH37212	Soybean	cytosol	76.05	77.28
KRH12191	Soybean	cytosol	76.55	77.01
KRH42397	Soybean	cytosol	75.65	76.26
CDY50771	Canola	cytosol	73.95	74.55
CDY39400	Canola	cytosol	74.15	74.37
AT5G44790.1	Thale cress	cytosol	73.85	73.93
Bra025102.1-P	Field mustard	cytosol	73.55	73.92
Bra027573.1-P	Field mustard	cytosol	72.06	72.06
PGSC0003DMT400032161	Potato	cytosol, plasma membrane, vacuole	9.48	71.97
Zm00001d027860_P001	Maize	plasma membrane	11.68	69.64
GSMUA_Achr8P06970_001	Banana	cytosol	65.37	69.39
GSMUA_Achr5P26800_001	Banana	cytosol	64.47	69.02
CDY69037	Canola	cytosol	40.12	68.84
Os02t0172600-00	Rice	cytosol	68.76	68.83
EES06348	Sorghum	cytosol	68.46	68.81
TraesCS6A01G156900.1	Wheat	cytosol	68.16	68.51
TraesCS6D01G146500.1	Wheat	cytosol	68.06	68.34
Zm00001d053783_P001	Maize	plasma membrane	67.96	68.24
TraesCS7D01G467100.1	Wheat	cytosol	67.86	67.93
KXG20553	Sorghum	plasma membrane	68.26	67.92
Os06t0665800-01	Rice	cytosol	67.96	67.9
TraesCS6B01G184800.1	Wheat	cytosol	65.77	67.8
TraesCS7A01G480100.1	Wheat	cytosol	67.56	67.63
TraesCS7B01G382300.1	Wheat	cytosol	67.47	67.53
CDY67659	Canola	cytosol	40.02	67.39
HORVU7Hr1G108890.1	Barley	cytosol, mitochondrion	65.37	64.03
Zm00001d011553_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	11.68	63.93
Zm00001d046953_P002	Maize	cytosol, endoplasmic reticulum, plasma membrane	63.07	61.12
PGSC0003DMT400032160	Potato	endoplasmic reticulum, plasma membrane, vacuole	22.46	56.68
HORVU6Hr1G031960.1	Barley	plastid	30.44	53.14
PGSC0003DMT400064232	Potato	plastid	18.76	23.01

Protein Annotations

EntrezGene:102603262	Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000
InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0009719	GO:GO:0009723	GO:GO:0009987	GO:GO:0010119
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829	GO:GO:0030001	GO:GO:0046872
GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:Heavy-metal-associated_CS	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	UniProt:M1AK33	InterPro:P-typ_ATPase_IB
PFAM:PF00122	PFAM:PF00403	PFAM:PF00702	EnsemblPlantsGene:PGSC0003DMG400009436	PGSC:PGSC0003DMG400009436	EnsemblPlants:PGSC0003DMT400024409
PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154	ScanProsite:PS01047	PFscan:PS50846	PANTHER:PTHR43520
PANTHER:PTHR43520:SF14	InterPro:P_typ_ATPase	SUPFAM:SSF55008	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665
TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI0002955066	RefSeq:XP_006364991.1
SEG:seg	:	:	:	:	:

Description

Heavy metal ATPase [Source:PGSC_GENE;Acc:PGSC0003DMG400009436]

Coordinates

chr2:-:27194995..27203856

Molecular Weight (calculated)

107202.0 Da

IEP (calculated)

4.918

GRAVY (calculated)

0.312

Length

1002 amino acids

Sequence
(BLAST)

0001: MAPSMRDVQL TVTGKSSSAA DDDIDGAGEE VRLLDSYDEV NLDKLGENLR RIQVRVTGMT CAACSTSVEG ALMGVNGVVK ASVALLQNKA DVVFDPSLVK
0101: DEEIINAIED AGFEAELLSE PAASRTNPHG TVVGQFTIGG MTCAACVNSV EGILKNLPGV RKAVVALATS LGEVEYDSSI ISKDDIANAI EDAGFEASFV
0201: QSSEQDKIVL GVVGISGEMD AQFLEGILSK LHGVKQFCFD RVSSELEVVF DPEVIGSRSL VDGIEGGSSG KFKLLVKNPY TRMTSRDLEE SSRMFRLFTA
0301: SLSLSVPVIL MRVLCPRIPL LYSLLIWQCG PFQMGDWLKW ALVTVIQFGI GKRFYIAAGR ALRNGSTNMD VLVALGTTAS YVYSVCALLY GAVSGFWSPT
0401: YFETSAMLIT FVLLGKYLET LAKGKTSGAI KKLVELTPAT ATLLVKDKGG KVVGEREIDA LLIQPGDILK VLPGTKVPVD GVVVWGSSHV NEGMVTGESA
0501: PVVKEIDSVV IGGTINLHGS LHIQGTKVGS NTVLSQIISL VETAQMSKAP IQKFADYIAS IFVPTVVTMS LLTFFGWYVA GVLGGYPEEW LPENGNYFVF
0601: SLMFAISVVV IACPCALGLA TPTAVMVATG VGANNGVLIK GGDALERAQK ISHVIFDKTG TLTQGNAKVT TVKIFNEMDR GEFLTLVASA EASSEHPLAK
0701: AILEYARHFH FFDEPSNTSE FQAYSEQAKF SGWLHDVSDF SVLPGKGIQC SIYGKWILVG NRKLLTENGI TIPSNVENFV VELEESARTG ILVAQDNIVI
0801: GALGIADPLK REAAVVVEGL IKMGVKPIMV TGDNWRTARA VAKEVGIQDV RAEVLPAGKA EVVRSFQKGG SVVAMVGDGI NDSPALAAAD VGMAIGAGTD
0901: IAIEAAEYVL MRSNLEDVII AIDLSRKTFA RIRWNYIFAM AYNVIAIPVA AGVFFPFLKL ELPPWVAGAC MAMSSVSVVC SSLYLKRYKK PRLTTILEIT
1001: IE

Best Arabidopsis Sequence Match ( AT5G44790.1 )
(BLAST)

0001: MAPSRRDLQL TPVTGGSSSQ ISDMEEVGLL DSYHNEANAD DILTKIEEGR DVSGLRKIQV GVTGMTCAAC SNSVEAALMN VNGVFKASVA LLQNRADVVF
0101: DPNLVKEEDI KEAIEDAGFE AEILAEEQTQ ATLVGQFTIG GMTCAACVNS VEGILRDLPG VKRAVVALST SLGEVEYDPN VINKDDIVNA IEDAGFEGSL
0201: VQSNQQDKLV LRVDGILNEL DAQVLEGILT RLNGVRQFRL DRISGELEVV FDPEVVSSRS LVDGIEEDGF GKFKLRVMSP YERLSSKDTG EASNMFRRFI
0301: SSLVLSIPLF FIQVICPHIA LFDALLVWRC GPFMMGDWLK WALVSVIQFV IGKRFYVAAW RALRNGSTNM DVLVALGTSA SYFYSVGALL YGAVTGFWSP
0401: TYFDASAMLI TFVLLGKYLE SLAKGKTSDA MKKLVQLTPA TAILLTEGKG GKLVGEREID ALLIQPGDTL KVHPGAKIPA DGVVVWGSSY VNESMVTGES
0501: VPVSKEVDSP VIGGTINMHG ALHMKATKVG SDAVLSQIIS LVETAQMSKA PIQKFADYVA SIFVPVVITL ALFTLVGWSI GGAVGAYPDE WLPENGTHFV
0601: FSLMFSISVV VIACPCALGL ATPTAVMVAT GVGATNGVLI KGGDALEKAH KVKYVIFDKT GTLTQGKATV TTTKVFSEMD RGEFLTLVAS AEASSEHPLA
0701: KAIVAYARHF HFFDESTEDG ETNNKDLQNS GWLLDTSDFS ALPGKGIQCL VNEKMILVGN RKLMSENAIN IPDHVEKFVE DLEESGKTGV IVAYNGKLVG
0801: VMGIADPLKR EAALVVEGLL RMGVRPIMVT GDNWRTARAV AKEVGIEDVR AEVMPAGKAD VIRSLQKDGS TVAMVGDGIN DSPALAAADV GMAIGAGTDV
0901: AIEAADYVLM RNNLEDVITA IDLSRKTLTR IRLNYVFAMA YNVVSIPIAA GVFFPVLRVQ LPPWAAGACM ALSSVSVVCS SLLLRRYKKP RLTTVLKITT
1001: E

Arabidopsis Description

RAN1Copper-transporting ATPase RAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.