Factsheet for PGSC0003DMT400064232

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092920.2.1	Tomato	plastid	98.29	97.81
CDY67923	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	14.08	68.86
CDY67922	Canola	cytosol	19.95	68.49
VIT_07s0129g01040.t01	Wine grape	plastid	69.16	68.15
KRH04519	Soybean	plastid	66.22	66.22
TraesCS7B01G337700.1	Wheat	extracellular, plasma membrane	32.31	65.67
KRH57989	Soybean	plasma membrane, plastid	66.59	65.38
CDX75636	Canola	mitochondrion	65.36	65.36
Bra011750.1-P	Field mustard	plastid	65.24	65.16
CDX69288	Canola	plastid	64.87	64.71
Bra039194.1-P	Field mustard	plastid	61.2	64.6
AT4G37270.1	Thale cress	plasma membrane, plastid	64.5	64.35
HORVU5Hr1G066370.30	Barley	golgi, mitochondrion, peroxisome	54.1	64.06
CDY46080	Canola	plastid	51.9	62.81
TraesCS7D01G428700.1	Wheat	plastid	61.93	61.26
TraesCS7A01G439100.1	Wheat	plastid	61.93	61.11
Os06t0690700-01	Rice	plastid	61.32	60.95
Zm00001d014569_P002	Maize	plastid	61.2	60.75
KXG20697	Sorghum	plastid	61.32	60.51
GSMUA_Achr9P16140_001	Banana	plastid	62.67	59.47
HORVU7Hr1G100160.2	Barley	plastid	61.81	57.98
PGSC0003DMT400032161	Potato	cytosol, plasma membrane, vacuole	4.77	29.55
PGSC0003DMT400032160	Potato	endoplasmic reticulum, plasma membrane, vacuole	12.85	26.45
PGSC0003DMT400024409	Potato	cytosol	23.01	18.76

Protein Annotations

EntrezGene:102602884	Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	EMBL:AM231415
InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	ProteinID:CAJ77510	ProteinID:CAJ77510.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006812	GO:GO:0006878
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009642	GO:GO:0009941
GO:GO:0009987	GO:GO:0015633	GO:GO:0016020	GO:GO:0016021	GO:GO:0016463	GO:GO:0016787
GO:GO:0016887	GO:GO:0019725	GO:GO:0019829	GO:GO:0055069	GO:GO:0071577	GO:GO:0099132
InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023299	UniProt:M1CBZ3	InterPro:P-typ_ATPase_IB
PFAM:PF00122	PFAM:PF00702	EnsemblPlantsGene:PGSC0003DMG400024953	PGSC:PGSC0003DMG400024953	EnsemblPlants:PGSC0003DMT400064232	PRINTS:PR00119
ScanProsite:PS00154	PANTHER:PTHR43079	InterPro:P_typ_ATPase	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665
TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI0002948898	RefSeq:XP_006339845.1	SEG:seg

Description

Heavy metal cation transport atpase [Source:PGSC_GENE;Acc:PGSC0003DMG400024953]

Coordinates

chr2:+:43280402..43290281

Molecular Weight (calculated)

88541.5 Da

IEP (calculated)

8.187

GRAVY (calculated)

0.136

Length

817 amino acids

Sequence
(BLAST)

001: MEALRLSTSF AGINCSIYKS TRRLKVNRNL LLSSLKPKSS VPIRSSAQFR GRIHCSACSC SSHSHHHHHH DHSHDHHNHH HHHHGPDEGD GKLTKFQEVF
101: LKFANAIRWT QLANYLRENL ELCCCSAVLF IAAAVCPYFL PKPAVLPLQR IFALIAFPLV GVSASLDALV DITGGKINIH VLMALAAFAS VFMGNVLEGG
201: LLLAMFNLAH IAEEYFTSRS KGDVKELKEN HPEFALVLHV DNQTLPSFTD LSYIEVPVSD LEVGSFILVK AGESVPVDCE VSRGRSTITI EHLTGEVKPL
301: DKKEGDNIPG GARNLDGMLI VKAKKTWKES MLSRIVQLTE EAQLSKPRLQ RWLDKFGEQY SKAVVLLSLA VAFLGPFLFK WPFFSTTACR GSIYRALGLM
401: VAASPCALAV APLAYATAIS ACAKRGILLK GGQVLDALAS CHSIAFDKTG TLTTGEFMCK AIEPIHGHAK SVGKGFASCC NPSCEKEALA VAAAMERGTT
501: HPIGRAVVDH SAGKDLPSIS VESFENLPGR GIIATLSSFE PRLGGGKPWK AFLGSVEYIT SLCDSEDESR RVEEAVNTSS HGVDFVRAAL SVNNQKVTLF
601: HFEDKPRPGV LDVVQTLQNQ AKLRVIMLTG DHEASARRVA KTVGIKEVNC SLKPEDKLYH VTSISRDTGG LIMVGDGIND APALAAATVG IVLAERASAA
701: AIAVADVLLL QDNISGVPFC VAKSRQTTSL IKQNVVLALC SIILASLTSV MGFLPLWLTV LLHEGGTLLV CLNSVRALNP PTWSWREDIS QIIDRMRSLV
801: MFLRHGTLPS TIQAAHL

Best Arabidopsis Sequence Match ( AT4G37270.1 )
(BLAST)

001: MEPATLTRSS SLTRFPYRRG LSTLRLARVN SFSILPPKTL LRQKPLRISA SLNLPPRSIR LRAVEDHHHD HHHDDEQDHH NHHHHHHQHG CCSVELKAES
101: KPQKMLFGFA KAIGWVRLAN YLREHLHLCC SAAAMFLAAA VCPYLAPEPY IKSLQNAFMI VGFPLVGVSA SLDALMDIAG GKVNIHVLMA LAAFASVFMG
201: NALEGGLLLA MFNLAHIAEE FFTSRSMVDV KELKESNPDS ALLIEVHNGN VPNISDLSYK SVPVHSVEVG SYVLVGTGEI VPVDCEVYQG SATITIEHLT
301: GEVKPLEAKA GDRVPGGARN LDGRMIVKAT KAWNDSTLNK IVQLTEEAHS NKPKLQRWLD EFGENYSKVV VVLSLAIAFL GPFLFKWPFL STAACRGSVY
401: RALGLMVAAS PCALAVAPLA YATAISSCAR KGILLKGAQV LDALASCHTI AFDKTGTLTT GGLTCKAIEP IYGHQGGTNS SVITCCIPNC EKEALAVAAA
501: MEKGTTHPIG RAVVDHSVGK DLPSIFVESF EYFPGRGLTA TVNGVKTVAE ESRLRKASLG SIEFITSLFK SEDESKQIKD AVNASSYGKD FVHAALSVDQ
601: KVTLIHLEDQ PRPGVSGVIA ELKSWARLRV MMLTGDHDSS AWRVANAVGI TEVYCNLKPE DKLNHVKNIA REAGGGLIMV GEGINDAPAL AAATVGIVLA
701: QRASATAIAV ADILLLRDNI TGVPFCVAKS RQTTSLVKQN VALALTSIFL AALPSVLGFV PLWLTVLLHE GGTLLVCLNS VRGLNDPSWS WKQDIVHLIN
801: KLRSQEPTSS SSNSLSSAH

Arabidopsis Description

HMA1Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M3H5]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.