CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

endoplasmic reticulum: 23041469

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH12191
KRH37212
KRH42397
KRH58516

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56240.1	KRH12191	AT5G44790.1	17223078
AT3G56240.1	KRH37212	AT5G44790.1	17223078
AT3G56240.1	KRH42397	AT5G44790.1	17223078
AT3G56240.1	KRH58516	AT5G44790.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055310.2.1	Tomato	plastid	80.25	80.25
PGSC0003DMT400060399	Potato	cytosol, plastid	80.25	80.25
VIT_13s0074g00770.t01	Wine grape	cytosol	79.01	74.42
KRG92037	Soybean	cytosol	96.3	63.41
Bra007230.1-P	Field mustard	cytosol, plastid	70.37	53.77
CDX72154	Canola	cytosol	69.14	53.33
CDY71670	Canola	cytosol	69.14	53.33
AT3G56240.1	Thale cress	cytosol	69.14	46.28
KRH71640	Soybean	cytosol, mitochondrion, plastid	71.6	44.62
KRH33278	Soybean	cytosol	71.6	44.62
CDX67640	Canola	cytosol	69.14	44.44
Bra003234.1-P	Field mustard	cytosol, plastid	69.14	44.09
CDX76052	Canola	cytosol	67.9	39.86
Bra014702.1-P	Field mustard	cytosol	67.9	33.33
CDY43346	Canola	cytosol	69.14	32.94
CDY32007	Canola	plastid	71.6	31.35
KRH48431	Soybean	cytosol	39.51	23.7
KRH60302	Soybean	cytosol, extracellular	37.04	22.73
KRH39252	Soybean	cytosol	35.8	21.48
KRH41596	Soybean	cytosol	34.57	21.21
KRH22990	Soybean	cytosol	33.33	20.3
KRH58299	Soybean	mitochondrion	35.8	17.47
KRH43920	Soybean	cytosol	35.8	17.37
KRH42188	Soybean	cytosol, plastid	35.8	17.26
KRH10507	Soybean	plastid	34.57	16.37
KRH10325	Soybean	plastid	35.8	15.68
KRH25010	Soybean	plastid	38.27	12.92
KRH29875	Soybean	plastid	37.04	12.5
KRH19750	Soybean	plastid	38.27	11.23
KRH32346	Soybean	plastid	38.27	11.07
KRG95861	Soybean	plastid	38.27	10.69
KRH67578	Soybean	plastid	38.27	10.69

Protein Annotations

EntrezGene:100799342	MapMan:25.5.2.3	Gene3D:3.30.70.100	EMBL:ACUP02006626	EnsemblPlantsGene:GLYMA_10G203200	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0030001	GO:GO:0046872	GO:GO:0046914
GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	UniProt:K7LKJ0	EnsemblPlants:KRH34745
ProteinID:KRH34745	ProteinID:KRH34745.1	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF172
SUPFAM:SSF55008	UniParc:UPI000233D680	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:43459433..43462045

Molecular Weight (calculated)

8565.3 Da

IEP (calculated)

6.546

GRAVY (calculated)

-0.151

Length

81 amino acids

Sequence
(BLAST)

1: MSQTVVLKVG MSCEGCVGAV KRVLGKLDGV ESYDIDLKEQ KVVVKGNVQP DTVLQTVSKT GKKTTFWEGE AATSETSTAT A

Best Arabidopsis Sequence Match ( AT1G66240.1 )
(BLAST)

001: MLKDLFQAVS YQNTASLSLF QALSVVESKA MSQTVVLRVA MTCEGCVGAV KRVLGKMEGV ESFDVDIKEQ KVTVKGNVQP DAVLQTVTKT GKKTAFWEAE
101: GETAKA

Arabidopsis Description

ATX1homolog of anti-oxidant 1 [Source:TAIR;Acc:AT1G66240]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.