Factsheet for Bra024449.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36489	Canola	cytosol	87.82	90.95
Bra011164.1-P	Field mustard	cytosol, plasma membrane	52.44	71.56
CDY08717	Canola	cytosol, nucleus, plasma membrane	92.86	70.88
AT2G19110.2	Thale cress	cytosol	69.75	70.82
Bra038842.1-P	Field mustard	cytosol	74.79	70.02
Bra024107.1-P	Field mustard	plasma membrane	51.6	69.54
Bra024103.1-P	Field mustard	peroxisome, plasma membrane, vacuole	42.02	65.44
Bra011165.1-P	Field mustard	cytosol	41.68	65.44
VIT_11s0103g00370.t01	Wine grape	plasma membrane	39.24	65.04
KRH02816	Soybean	plasma membrane	36.05	57.35
TraesCS7B01G320900.1	Wheat	plasma membrane	34.54	53.66
GSMUA_Achr5P22660_001	Banana	plasma membrane	36.81	53.61
HORVU5Hr1G094430.8	Barley	endoplasmic reticulum, plasma membrane	31.18	48.5
KRH19069	Soybean	plasma membrane	43.87	47.63
TraesCS7A01G420000.1	Wheat	plasma membrane	36.89	46.75
TraesCS7D01G412800.1	Wheat	plasma membrane	37.06	46.67
GSMUA_Achr8P24660_001	Banana	cytosol	36.89	46.65
GSMUA_Achr5P21940_001	Banana	extracellular, plasma membrane	36.55	46.52
TraesCS5B01G388000.1	Wheat	plasma membrane	32.27	46.32
TraesCS5A01G383400.1	Wheat	plasma membrane	31.43	45.83
HORVU7Hr1G097210.4	Barley	plasma membrane	36.39	45.77
TraesCS7D01G412400.1	Wheat	plasma membrane	38.4	45.56
TraesCS7A01G419500.1	Wheat	plasma membrane	37.48	45.28
TraesCS7B01G320100.2	Wheat	plasma membrane	38.57	44.87
HORVU7Hr1G097240.1	Barley	plasma membrane	37.98	44.8
TraesCS5D01G392700.1	Wheat	plasma membrane	32.1	44.78
Os06t0700700-02	Rice	plasma membrane	40.0	44.61
EER90320	Sorghum	plasma membrane	38.57	42.94
Zm00001d014669_P007	Maize	plasma membrane	38.82	42.04
EER96099	Sorghum	cytosol	31.26	41.56
Zm00001d005190_P001	Maize	plastid	31.26	41.43
Solyc07g009130.2.1	Tomato	plastid	44.62	40.78
EER96100	Sorghum	cytosol	31.34	39.98
Zm00001d005189_P001	Maize	plasma membrane	31.93	39.42
Os07t0232900-01	Rice	cytosol, nucleus, plasma membrane	32.69	38.74
Zm00001d019226_P003	Maize	cytosol	23.78	31.69
Bra002374.1-P	Field mustard	plastid	16.22	21.81
Bra011750.1-P	Field mustard	plastid	14.03	20.42
Bra025102.1-P	Field mustard	cytosol	16.81	20.06
Bra039194.1-P	Field mustard	plastid	12.86	19.77
Bra027573.1-P	Field mustard	cytosol	16.64	19.76
Bra011450.1-P	Field mustard	plastid	15.55	19.68
Bra003110.1-P	Field mustard	cytosol	15.55	18.94
Bra027641.1-P	Field mustard	mitochondrion	16.72	16.69

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	EnsemblPlantsGene:Bra024449	EnsemblPlants:Bra024449.1	EnsemblPlants:Bra024449.1-P
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019829	GO:GO:0030001	GO:GO:0046872	GO:GO:0099132	InterPro:HAD-like_sf
InterPro:HAD_sf	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299
UniProt:M4E6P5	InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00702	PRINTS:PR00119	ScanProsite:PS00154
PFscan:PS50846	PANTHER:PTHR43338	InterPro:P_typ_ATPase	SUPFAM:SSF55008	SUPFAM:SSF56784	SUPFAM:SSF81653
SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI000253EF1C	SEG:seg

Description

AT2G19110 (E=0.0) HMA4 | HMA4; cadmium ion transmembrane transporter/ cadmium-transporting ATPase/ zinc ion transmembrane transporter

Coordinates

chrA06:-:15828492..15835447

Molecular Weight (calculated)

129721.0 Da

IEP (calculated)

6.769

GRAVY (calculated)

-0.281

Length

1190 amino acids

Sequence
(BLAST)

0001: MELQNEDKNK EEEKNTKKKW QKSYFDVLGI CCSSEVPLIE NILKSLDGVK EYSVNVPSRT VIVVHDNLLI SPFQIAKALN QAKFEANVKV DGKTNFKNKW
0101: PSPFAPASGI LLLLSFLKFV YPPLRWIAVA AVAAGIYPIL AKAVASIGRK RVDINILVII TVAATLAMQD YMEAAAVVFL FTIAEWLETR ASYKATAVMQ
0201: SLMSLAPQKA IIAETGEEVE VDEVKVNTIV AVKAGETIPI DGIVVDGNCE VDEKTLTGEA YPVPKQRDST VWAGTINLNG YVSVKTTSLA SDCVVAKMAK
0301: LVEEAQSSKT KSQRLIDKCS QYYTPAIILV SGGFAVVPAV MKLHNLNHWF HLALVVLVSA CPCGLILSTP VATFCALTKA ATSGLLIKSA DYLDTLSKIK
0401: ITAFDKTGTI TRGEFIVIEF RSLHSTKPGL LPEESSLSLS SDHSLVDYAK SVNVEPRTEE VEGYQNFPGE GIYGKIDGND IYIGNKRIGS RAKISTVPEI
0501: EVDTNKGGKT VGYIYVGERL AGVFNLSDAC RSGVAQAMKE LKDLGIKTAM LTGDNQDAAM HAQEQLGNAM DVVHGELLPE DKSRIILEFK KEGPTAMVGD
0601: GVNDAPALAT ADIGISMGIS GSALATQTGH IILMSNDIRR IPQAIRLARR ARRKVVENLF ISITLKVGIL VLAFAGHPLI WAAVLADVGT CLLVILNSML
0701: LLRDKDKTKN KKCYRASSTL LNGKKLEGGA EEELDLEAGL LTKSGQCNSG CCGDKKKQEK VKPSSKSSYT HRHSGCCGDK QQQDNVKTIV KESCCGEKNK
0801: IHMASFSSCK KSTHVKKGGS GCCDKKKEKM KETVAKRCCE EKEKNVEMQI LGGQELIDLE KGLAGETCKS RCYGTKEKAA EAAYKVDCNS GSCQENETVK
0901: QRCPEKTCLD IETGDSKLVC YGETEGEVGE QSDLEVKNER ECKSGCCSDE RKQTEEITLA SEEETTEILD CSSSVKQSCH ESTCLEVKEQ FDLKIENEGR
1001: CKSDCCGDEK QTGEITMACE EETDGSDCSS TCCGNKEKVE QSCHEKACLD IEAGVSCDLK LACCGNTEGE VKEKLDFEEG LQIKNQGQCK SDCGLKEEGS
1101: SSLVGKEREI VKVLSQSSNC CTSPTELHVK KKKIEICCKV KTPEAVACES IKCKEREKRH IGKSCCRSYA KEYCSHRHHH HHHHHHVGAV

Best Arabidopsis Sequence Match ( AT2G19110.2 )
(BLAST)

0001: MALQNKEEEK KKVKKLQKSY FDVLGICCTS EVPIIENILK SLDGVKEYSV IVPSRTVIVV HDSLLISPFQ IAKALNEARL EANVRVNGET SFKNKWPSPF
0101: AVVSGLLLLL SFLKFVYSPL RWLAVAAVAA GIYPILAKAF ASIKRPRIDI NILVIITVIA TLAMQDFMEA AAVVFLFTIS DWLETRASYK ATSVMQSLMS
0201: LAPQKAIIAE TGEEVEVDEV KVDTVVAVKA GETIPIDGIV VDGNCEVDEK TLTGEAFPVP KQRDSTVWAG TINLNGYICV KTTSLAGDCV VAKMAKLVEE
0301: AQSSKTKSQR LIDKCSQYYT PAIILVSACV AIVPVIMKVH NLKHWFHLAL VVLVSGCPCG LILSTPVATF CALTKAATSG LLIKSADYLD TLSKIKIVAF
0401: DKTGTITRGE FIVIDFKSLS RDINLRSLLY WVSSVESKSS HPMAATIVDY AKSVSVEPRP EEVEDYQNFP GEGIYGKIDG NDIFIGNKKI ASRAGCSTVP
0501: EIEVDTKGGK TVGYVYVGER LAGFFNLSDA CRSGVSQAMA ELKSLGIKTA MLTGDNQAAA MHAQEQLGNV LDVVHGDLLP EDKSRIIQEF KKEGPTAMVG
0601: DGVNDAPALA TADIGISMGI SGSALATQTG NIILMSNDIR RIPQAVKLAR RARRKVVENV CLSIILKAGI LALAFAGHPL IWAAVLVDVG TCLLVIFNSM
0701: LLLREKKKIG NKKCYRASTS KLNGRKLEGD DDYVVDLEAG LLTKSGNGQC KSSCCGDKKN QENVVMMKPS SKTSSDHSHP GCCGDKKEEK VKPLVKDGCC
0801: SEKTRKSEGD MVSLSSCKKS SHVKHDLKMK GGSGCCASKN EKGKEVVAKS CCEKPKQQVE SVGDCKSGHC EKKKQAEDIV VPVQIIGHAL THVEIELQTK
0901: ETCKTSCCDS KEKVKETGLL LSSENTPYLE KGVLIKDEGN CKSGSENMGT VKQSCHEKGC SDEKQTGEIT LASEEETDDQ DCSSGCCVNE GTVKQSFDEK
1001: KHSVLVEKEG LDMETGFCCD AKLVCCGNTE GEVKEQCRLE IKKEEHCKSG CCGEEIQTGE ITLVSEEETE STNCSTGCCV DKEEVTQTCH EKPASLVVSG
1101: LEVKKDEHCE SSHRAVKVET CCKVKIPEAC ASKCRDRAKR HSGKSCCRSY AKELCSHRHH HHHHHHHHHV SA

Arabidopsis Description

HMA4Putative cadmium/zinc-transporting ATPase HMA4 [Source:UniProtKB/Swiss-Prot;Acc:O64474]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.