Factsheet for Solyc07g009130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0103g00370.t01	Wine grape	plasma membrane	37.94	68.8
AT4G30120.1	Thale cress	cytosol	25.88	62.18
CDY51647	Canola	golgi, plasma membrane, vacuole	16.28	61.27
CDY69827	Canola	plasma membrane	29.26	60.48
Bra024103.1-P	Field mustard	peroxisome, plasma membrane, vacuole	35.02	59.69
Bra011165.1-P	Field mustard	cytosol	34.49	59.23
CDY28160	Canola	cytosol	34.49	59.23
CDX68627	Canola	cytosol, plasma membrane, vacuole	34.41	59.1
KRH02816	Soybean	plasma membrane	33.64	58.56
CDY72630	Canola	golgi, plasma membrane, vacuole	15.59	58.33
TraesCS7B01G320900.1	Wheat	plasma membrane	33.87	57.57
Bra011164.1-P	Field mustard	cytosol, plasma membrane	38.48	57.45
CDY51646	Canola	cytosol, plasma membrane, vacuole	8.6	57.44
CDY30170	Canola	cytosol, peroxisome, plasma membrane	38.4	57.14
CDY69511	Canola	plasma membrane	31.41	57.12
CDX68625	Canola	plasma membrane	31.87	56.85
CDY51690	Canola	cytosol, plasma membrane, vacuole	7.45	56.73
CDY62400	Canola	plasma membrane	37.94	56.65
AT4G30110.1	Thale cress	plasma membrane	40.17	54.99
GSMUA_Achr5P22660_001	Banana	plasma membrane	34.41	54.83
Bra024107.1-P	Field mustard	plasma membrane	36.87	54.36
CDY28206	Canola	plasma membrane	29.26	52.84
HORVU5Hr1G094430.8	Barley	endoplasmic reticulum, plasma membrane	30.26	51.5
TraesCS7A01G420000.1	Wheat	plasma membrane	36.41	50.48
KRH19069	Soybean	plasma membrane	42.32	50.27
HORVU7Hr1G097210.4	Barley	plasma membrane	36.41	50.11
TraesCS7D01G412800.1	Wheat	plasma membrane	36.33	50.05
TraesCS5B01G388000.1	Wheat	plasma membrane	31.11	48.85
TraesCS5A01G383400.1	Wheat	plasma membrane	30.57	48.77
GSMUA_Achr5P21940_001	Banana	extracellular, plasma membrane	35.02	48.77
CDX68623	Canola	cytosol, endoplasmic reticulum, plasma membrane	20.35	48.53
GSMUA_Achr8P24660_001	Banana	cytosol	34.87	48.25
TraesCS5D01G392700.1	Wheat	plasma membrane	31.26	47.71
CDY51090	Canola	cytosol	39.25	46.97
CDY36489	Canola	cytosol	41.32	46.82
TraesCS7D01G412400.1	Wheat	plasma membrane	35.56	46.16
HORVU7Hr1G097240.1	Barley	plasma membrane	35.71	46.09
TraesCS7A01G419500.1	Wheat	plasma membrane	34.72	45.89
Os06t0700700-02	Rice	plasma membrane	37.33	45.55
TraesCS7B01G320100.2	Wheat	plasma membrane	35.71	45.45
AT2G19110.2	Thale cress	cytosol	40.71	45.22
EER96100	Sorghum	cytosol	32.33	45.12
EER90320	Sorghum	plasma membrane	36.87	44.9
Bra024449.1-P	Field mustard	cytosol	40.78	44.62
Zm00001d005190_P001	Maize	plastid	30.49	44.21
EER96099	Sorghum	cytosol	30.34	44.13
Zm00001d014669_P007	Maize	plasma membrane	36.64	43.4
Zm00001d005189_P001	Maize	plasma membrane	31.8	42.95
Bra038842.1-P	Field mustard	cytosol	40.32	41.31
Os07t0232900-01	Rice	cytosol, nucleus, plasma membrane	31.41	40.74
Zm00001d019226_P003	Maize	cytosol	24.35	35.5
CDY08717	Canola	cytosol, nucleus, plasma membrane	41.86	34.96
Solyc11g062120.1.1	Tomato	cytosol, peroxisome, plasma membrane	5.91	25.93
Solyc01g105160.2.1	Tomato	plastid	13.98	25.07
Solyc02g068490.2.1	Tomato	cytosol	16.9	21.93
Solyc08g061610.2.1	Tomato	plastid	14.98	21.81
Solyc08g080890.2.1	Tomato	cytosol	14.29	20.9
Solyc02g092920.2.1	Tomato	plastid	12.83	20.34
Solyc08g080870.2.1	Tomato	cytosol	14.29	19.5
Solyc11g062100.1.1	Tomato	cytosol, peroxisome, plasma membrane	8.99	17.33
CDY51648	Canola	cytosol	0.84	16.18

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829	GO:GO:0030001
GO:GO:0046872	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	UniProt:K4CC32	InterPro:P-typ_ATPase_IB	PFAM:PF00122
PFAM:PF00702	PRINTS:PR00119	ScanProsite:PS00154	ScanProsite:PS01229	PFscan:PS50846	PANTHER:PTHR43338
InterPro:P_typ_ATPase	SUPFAM:SSF55008	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	EnsemblPlantsGene:Solyc07g009130.2
EnsemblPlants:Solyc07g009130.2.1	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01512	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI000276B7FA
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:4107448..4119376

Molecular Weight (calculated)

140446.0 Da

IEP (calculated)

7.256

GRAVY (calculated)

-0.231

Length

1302 amino acids

Sequence
(BLAST)

0001: MKESEKINND INKLSKSYFD VLGICCTSEV VLVEKILKNL DGVREVSVIV TTKTVIVTHD ALLISQQQIV KALNQARLEA SIRVKGLQNY QKKWPSPFAI
0101: GSGILLALSF LKYFYQPLQW LALVAVAVGI PPIIFRGIAA IRNFTLDINI LVLIAVAGSI VLHDYWEAAT IVFLFTIAEW LESRASHKAN AVMSSLVNIV
0201: PPTAVLAENG EVVNVDQVKL NSVLAVKAGE TIPIDGIVVE GECDVDEKTL TGESFPVSKQ KDSTVWAGTT NLNGYISVKT TALAEDCAVA RMAKLVEDAQ
0301: NKKSKAERYI DKCAKYYTPV IVVIAAGFAI VPTALRVHNL KEWYRLALVA LVSACPCALV LSTPVAMCCA LSKAATSGLL FKGAEYLETL AKIKIMAFDK
0401: TGTITRGEFA VTEFRSLIDG LSLNTLLYWV SSIESKSGHP MAAALVDYAQ SNSVEPKPDR VEQFQNFTGE GIYGRIDGME IYVGNRKISS RAGCTTVPEI
0501: EGGDSLQGKS VGYIFLGSSP AGLFRLSDVC RTGVKDAMRE LKQMGIKTVM LTGDCYAAAN HVQDQLHGAL DEFQAELLPE DKATIIKGFQ KEAPTAMIGD
0601: GLNDAPALAT ADIGISMGIS GSALAKETGH VILMTNDIGR IPKAACLARR VRRKIIENMI IAIGTKGAIV ALAIAGHPLV WAAVLADAGT CLLVILNSML
0701: LLRGATRRHE KKICKSSTSS HAHHHKDKAS CCKSEKTPQQ CCSDIESQKE CRKKSCSSEV CVQRCQPIPS GSTSCVNDQR SDSTQNNGHQ SHSHPQCCSS
0801: KMSVTACQSA VSESKSCGSN NCSDSIRKSS CHSSTNSLIS SSDLSAPQCH SATSSSKSCG GTKRSNLSDK SCCRSLEIPQ TCSTKKAAHG CYSEVSGPKS
0901: CGNSKCSDST DNNIHHSHSD RQTCTSKVCA PQSPSATSSS MTCGNTKCSD TTSKISCHSH ANSEPCSSKK SGPTCQNANS GSRSCGNHKC QDSATEHGVH
1001: SLTDPLSEEV ILKQKILVLE SNHDLSHGCC EEEHDHHPNL DKAYDSCALQ ECHYSVQGDI TDISKTGIQE TSHCDSTNQT CQTVISGSMI FGDNKSLDSV
1101: DIHECHSHAH PPHKEEPHHS VGHGCSDKEH DHSHPEKAFD SCATQECCFS VQDHSIDISE NGSQGTDHCD SIKQSMVIPC SCKHTPQEKV SHCGFHSTTI
1201: PTDEELAKLV RRCCDYRPCH NVRSGCRNHA TECGPTTRST INILRDNHHH HHLDCSGRKV CSPIEKRHIG GCCESFRKEC CPKNINHFAS SFGGGLSEIV
1301: LE

Best Arabidopsis Sequence Match ( AT4G30110.2 )
(BLAST)

001: MASKKMTKSY FDVLGICCTS EVPLIENILN SMDGVKEFSV IVPSRTVIVV HDTLILSQFQ IVKALNQAQL EANVRVTGET NFKNKWPSPF AVVSGILLLL
101: SFFKYLYSPF RWLAVAAVVA GIYPILAKAV ASLARFRIDI NILVVVTVGA TIGMQDYTEA AVVVFLFTIA EWLQSRASYK ASAVMQSLMS LAPQKAVIAE
201: TGEEVEVDEL KTNTVIAVKA GETIPIDGVV VDGNCEVDEK TLTGEAFPVP KLKDSTVWAG TINLNGYITV NTTALAEDCV VAKMAKLVEE AQNSKTETQR
301: FIDKCSKYYT PAIILISICF VAIPFALKVH NLKHWVHLAL VVLVSACPCG LILSTPVATF CALTKAATSG LLIKGADYLE TLAKIKIVAF DKTGTITRGE
401: FIVMDFQSLS EDISLQSLLY WVSSTESKSS HPMAAAVVDY ARSVSVEPKP EAVEDYQNFP GEGIYGKIDG KEVYIGNKRI ASRAGCLSVP DIDVDTKGGK
501: TIGYVYVGET LAGVFNLSDA CRSGVAQAMK ELKSLGIKIA MLTGDNHAAA MHAQEQLGNA MDIVRAELLP EDKSEIIKQL KREEGPTAMV GDGLNDAPAL
601: ATADIGISMG VSGSALATET GNIILMSNDI RRIPQAIKLA KRAKRKVVEN VVISITMKGA ILALAFAGHP LIWAAVLADV GTCLLVILNS MLLLSDKHKT
701: GNKCYRESSS SSVLIAEKLE GDAAGDMEAG LLPKISDKHC KPGCCGTKTQ EKAMKPAKAS SDHSHSGCCE TKQKDNVTVV KKSCCAEPVD LGHGHDSGCC
801: GDKSQQPHQH EVQVQQSCHN KPSGLDSGCC GGKSQQPHQH ELQQSCHDKP SGLDIGTGPK HEGSSTLVNL EGDAKEELKV LVNGFCSSPA DLAITSLKVK
901: SDSHCKSNCS SRERCHHGSN CCRSYAKESC SHDHHHTRAH GVGTLKEIVI E

Arabidopsis Description

HMA2Cadmium/zinc-transporting ATPase HMA2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZW4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.