Factsheet for Bra029854.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 3
nucleus 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003110.1-P
Bra025102.1-P
Bra027573.1-P
Bra027641.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66240.1	Bra003110.1-P	AT1G63440.1	16367966
AT1G66240.1	Bra027641.1-P	AT1G63440.1	16367966
AT1G66240.1	Bra025102.1-P	AT5G44790.1	17223078
AT1G66240.1	Bra027573.1-P	AT5G44790.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08589	Canola	cytosol, plastid	100.0	100.0
CDY00957	Canola	cytosol, plastid	98.68	98.68
TraesCS7D01G342900.1	Wheat	cytosol	81.58	80.52
TraesCS7B01G247000.1	Wheat	cytosol	81.58	80.52
Os08t0205400-01	Rice	extracellular, plasma membrane	82.89	77.78
Zm00001d031132_P002	Maize	cytosol	81.58	73.81
EES17440	Sorghum	cytosol, plastid	81.58	71.26
AT1G66240.1	Thale cress	cytosol, plastid	90.79	65.09
Bra007230.1-P	Field mustard	cytosol, plastid	76.32	54.72
GSMUA_Achr6P07500_001	Banana	cytosol, plastid	78.95	53.57
Bra003234.1-P	Field mustard	cytosol, plastid	76.32	45.67
TraesCS7A01G335400.1	Wheat	cytosol	81.58	37.13
Bra014702.1-P	Field mustard	cytosol	75.0	34.55
Bra001948.1-P	Field mustard	cytosol	32.89	17.86
Bra007008.1-P	Field mustard	cytosol, plastid	48.68	14.51
Bra003142.1-P	Field mustard	cytosol, plastid	47.37	14.46
Bra035681.1-P	Field mustard	plastid	43.42	12.45
Bra028868.1-P	Field mustard	cytosol, plastid	43.42	11.42
Bra017191.1-P	Field mustard	cytosol	39.47	11.32
Bra005201.1-P	Field mustard	cytosol	39.47	11.15
Bra009578.1-P	Field mustard	cytosol, plastid	44.74	10.33

Protein Annotations

EnsemblPlants:Bra029854.1	EnsemblPlants:Bra029854.1-P	EnsemblPlantsGene:Bra029854	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF172	PFAM:PF00403	PFscan:PS50846	SUPFAM:SSF55008
UniParc:UPI000254785F	UniProt:M4EM34	MapMan:25.5.2.3	:	:	:

Description

AT1G66240 (E=2e-034) ATX1, ATATX1 | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1); metal ion binding

Coordinates

chrA05:+:21978310..21979090

Molecular Weight (calculated)

8142.9 Da

IEP (calculated)

8.216

GRAVY (calculated)

-0.147

Length

76 amino acids

Sequence
(BLAST)

1: MSQTVVLRVA MSCEGCVGAV KRVLGKMEGV ESFDVDIKEQ KVTVKGNVQP DAVLQTVSKT GKKSAFWDTE AEPAKA

Best Arabidopsis Sequence Match ( AT1G66240.1 )
(BLAST)

001: MLKDLFQAVS YQNTASLSLF QALSVVESKA MSQTVVLRVA MTCEGCVGAV KRVLGKMEGV ESFDVDIKEQ KVTVKGNVQP DAVLQTVTKT GKKTAFWEAE
101: GETAKA

Arabidopsis Description

ATX1homolog of anti-oxidant 1 [Source:TAIR;Acc:AT1G66240]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.