Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- golgi 2
- plasma membrane 3
- endoplasmic reticulum 2
- vacuole 2
- cytosol 3
- nucleus 1
- peroxisome 1
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g055310.2.1 | Tomato | plastid | 72.22 | 32.1 |
| PGSC0003DMT400060399 | Potato | cytosol, plastid | 72.22 | 32.1 |
| VIT_13s0074g00770.t01 | Wine grape | cytosol | 72.22 | 30.23 |
| GSMUA_Achr6P07500_001 | Banana | cytosol, plastid | 83.33 | 26.79 |
| GSMUA_Achr6P17300_001 | Banana | cytosol | 80.56 | 26.61 |
| TraesCS7D01G429000.1 | Wheat | cytosol | 75.0 | 24.77 |
| TraesCS7A01G439300.1 | Wheat | cytosol | 75.0 | 24.55 |
| HORVU7Hr1G100230.1 | Barley | cytosol | 75.0 | 24.11 |
| PGSC0003DMT400050141 | Potato | cytosol, plastid | 66.67 | 22.64 |
| Solyc11g007200.1.1 | Tomato | extracellular | 63.89 | 20.35 |
| KRH71640 | Soybean | cytosol, mitochondrion, plastid | 66.67 | 18.46 |
| KRH33278 | Soybean | cytosol | 66.67 | 18.46 |
| TraesCS7B01G338200.1 | Wheat | cytosol | 50.0 | 16.82 |
| GSMUA_Achr1P14500_001 | Banana | cytosol | 38.89 | 10.37 |
| GSMUA_Achr8P26110_001 | Banana | cytosol | 38.89 | 8.92 |
| GSMUA_Achr7P17730_001 | Banana | cytosol, endoplasmic reticulum, plastid | 30.56 | 8.27 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 38.89 | 7.95 |
| GSMUA_Achr5P04340_001 | Banana | cytosol | 33.33 | 7.69 |
| GSMUA_Achr10P... | Banana | cytosol | 33.33 | 7.36 |
| GSMUA_Achr7P10400_001 | Banana | plastid | 38.89 | 6.6 |
| GSMUA_Achr7P15330_001 | Banana | plastid | 36.11 | 6.1 |
| GSMUA_Achr6P34370_001 | Banana | plastid | 36.11 | 5.86 |
| GSMUA_Achr2P16130_001 | Banana | mitochondrion, plastid | 33.33 | 5.61 |
| GSMUA_Achr9P03120_001 | Banana | plastid | 33.33 | 5.41 |
| GSMUA_Achr4P30560_001 | Banana | plastid | 27.78 | 5.18 |
Protein Annotations
| Gene3D:3.30.70.100 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0030001 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr10G11110_001 | EnsemblPlants:GSMUA_Achr10P11110_001 | EnsemblPlants:GSMUA_Achr10T11110_001 | InterPro:HMA_dom |
| InterPro:HMA_dom_sf | InterPro:IPR006121 | UniProt:M0RH87 | PFscan:PS50846 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF172 |
| SUPFAM:SSF55008 | UniParc:UPI000295530F | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G11110_001]
Coordinates
chr10:+:20692870..20695225
Molecular Weight (calculated)
3740.8 Da
IEP (calculated)
8.226
GRAVY (calculated)
0.631
Length
36 amino acids
Sequence
(BLAST)
(BLAST)
1: MAETVVLKVG MSCEGCIGAV KRVLTKMEAS SPSTLI
001: MAQTVVLKVG MSCQGCVGAV NRVLGKMEGV ESFDIDIKEQ KVTVKGNVEP EAVFQTVSKT GKKTSYWPVE AEAEPKAEAD PKVETVTETK TEAETKTEAK
101: VDAKADVEPK AAEAETKPSQ V
101: VDAKADVEPK AAEAETKPSQ V
Arabidopsis Description
CCHCopper transport protein CCH [Source:UniProtKB/Swiss-Prot;Acc:O82089]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.