Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0218800-01 | Rice | nucleus | 75.06 | 30.68 |
| Solyc09g098250.2.1 | Tomato | nucleus | 14.07 | 7.73 |
| Os09t0134500-02 | Rice | nucleus | 13.83 | 5.48 |
| VIT_05s0049g02100.t01 | Wine grape | cytosol | 0.74 | 3.33 |
| Os06t0275500-01 | Rice | nucleus | 6.91 | 3.12 |
| Os03t0307800-01 | Rice | nucleus | 4.94 | 2.23 |
| Os12t0613200-02 | Rice | nucleus | 5.93 | 1.98 |
| Os01t0655300-01 | Rice | cytosol, nucleus | 0.25 | 1.92 |
| HORVU0Hr1G020960.1 | Barley | nucleus | 1.98 | 1.87 |
| CDX95184 | Canola | cytosol | 5.19 | 1.86 |
| Os09t0307800-01 | Rice | cytosol | 0.49 | 0.59 |
| Os02t0553802-01 | Rice | nucleus | 0.99 | 0.48 |
| Os09t0556700-01 | Rice | nucleus | 0.25 | 0.19 |
| Os02t0554000-01 | Rice | nucleus | 0.25 | 0.15 |
| Os04t0429100-01 | Rice | nucleus | 0.0 | 0.0 |
| Solyc09g098260.1.1 | Tomato | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.30.30.140 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:4324589 | ProteinID:BAD81418.1 | ProteinID:BAF04329.2 |
| ProteinID:BAS71057.1 | ProteinID:EEE54125.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000313 |
| InterPro:IPR013083 | InterPro:IPR019787 | EnsemblPlantsGene:Os01g0218900 | EnsemblPlants:Os01t0218900-01 | PFAM:PF00628 | PFAM:PF00855 |
| PFscan:PS50016 | PFscan:PS50812 | PANTHER:PTHR13793 | PANTHER:PTHR13793:SF129 | InterPro:PWWP_dom | UniProt:Q5NAU3 |
| SMART:SM00249 | SUPFAM:SSF57903 | SUPFAM:SSF63748 | UniParc:UPI000049E77F | RefSeq:XP_015611881.1 | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
Zinc finger, PHD-type domain containing protein. (Os01t0218900-01)
Coordinates
chr1:-:6518152..6521026
Molecular Weight (calculated)
44513.7 Da
IEP (calculated)
5.267
GRAVY (calculated)
-0.460
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEPPPAGEG SGMMMPAKRR RERVLPSRFK DSVLVLPTAA AKKGKPAEAA AEGGVVDGEL YDVELEEGDP GMLWTGDERP VQTEEELYWA CRNIRRSSTS
101: TSGSFSSSIF SGSSAVTSLS NAGGGGGNGR PEGKPTVVVE CKPKSDGGER KEDFYWPEEF VLGDVVWARS GKKCPAWPAL VIDPLLHAPR VVLNSCIPGA
201: LCVMFFGYSN SGLRDYGWVK QGLIFPFVEY LDRFKGQTLY KIKASRFREA IEEAFLAERG LFELETDEGC SLEKSVNDQS IPDGLLEGSG SNNEQECQSE
301: AQVVGKSPGC DICGNRLPCK IASKKKQAGE RLLCRHCDKL LQSKQYCGIC KKIWHHTDGG NWVCCDECQI WVHVECDQTC IKMEDLENAD YFCPDCKSKR
401: KNISS
101: TSGSFSSSIF SGSSAVTSLS NAGGGGGNGR PEGKPTVVVE CKPKSDGGER KEDFYWPEEF VLGDVVWARS GKKCPAWPAL VIDPLLHAPR VVLNSCIPGA
201: LCVMFFGYSN SGLRDYGWVK QGLIFPFVEY LDRFKGQTLY KIKASRFREA IEEAFLAERG LFELETDEGC SLEKSVNDQS IPDGLLEGSG SNNEQECQSE
301: AQVVGKSPGC DICGNRLPCK IASKKKQAGE RLLCRHCDKL LQSKQYCGIC KKIWHHTDGG NWVCCDECQI WVHVECDQTC IKMEDLENAD YFCPDCKSKR
401: KNISS
0001: MILKRTLTTF ENQNLKRCKI DSEIEYGRKK GEIIVYKKRQ RATVDQPCSK EPELLTSSSS SLTSKEESQQ VCSDQSKSSR GRVRAVPSRF KDSIVGTWKS
0101: SRRKGESTES SHDDDDVSLG KKVKGFSGSS KLHRSKDSKV FPRKDNGDSS EVDCDYWDVQ ISYDDANFGM PKKSDASRKG VYKPEEFTVG DLVWAKCGKR
0201: FPAWPAVVID PISQAPDGVL KHCVPGAICV MFFGYSKDGT QRDYAWVRQG MVYPFTEFMD KFQDQTNLFN YKASEFNKAL EEAVLAENGN FGDAEIISPD
0301: SSATESDQDY GPASRFQGSY HEDIRTCDGC GSVMPLKSLK RTKDSQPEEL LCKHCSKLRK SNQYCGICKR IWHPSDDGDW VCCDGCDVWV HAECDNITNE
0401: RFKELEHNNY YCPDCKVQHE LTPTILEEQN SVFKSTEKTT ETGLPDAITV VCNGMEGTYI RKFHAIECKC GSCGSRKQSP SEWERHTGCR AKKWKYSVRV
0501: KDTMLPLEKW IAEFSTYTLE TQMLDKQKML SLLEEKYEPV RAKWTTERCA VCRWVEDWEE NKMIICNRCQ VAVHQECYGV SKSQDLTSWV CRACETPDIE
0601: RDCCLCPVKG GALKPSDVEG LWVHVTCAWF RPEVGFLNHE NMEPAVGLFK IPANSFLKVC TICKQTHGSC VHCCKCATHF HAMCASRAGY NMELHCLEKN
0701: GVQRTRKSVY CSFHRKPDPD SVVVVHTPSG VFGSRNLLQN QYGRAKGSRL VLTKKMKLPG FQTQTQAEQS RVFDSLSAAR CRIYSRSNTK IDLEAISHRL
0801: KGPSHHSLSA IENLNSFKAS FSFRAPFMSV FCFLGATFSE YLRKILISIY LVTHQEADFT SFRERLKHLQ RTENFRVCFG KSGIHGWGLF ARKSIQEGEM
0901: IIEYRGVKVR RSVADLREAN YRSQGKDCYL FKISEEIVID ATDSGNIARL INHSCMPNCY ARIVSMGDGE DNRIVLIAKT NVAAGEELTY DYLFEVDESE
1001: EIKVPCLCKA PNCRKFMN
0101: SRRKGESTES SHDDDDVSLG KKVKGFSGSS KLHRSKDSKV FPRKDNGDSS EVDCDYWDVQ ISYDDANFGM PKKSDASRKG VYKPEEFTVG DLVWAKCGKR
0201: FPAWPAVVID PISQAPDGVL KHCVPGAICV MFFGYSKDGT QRDYAWVRQG MVYPFTEFMD KFQDQTNLFN YKASEFNKAL EEAVLAENGN FGDAEIISPD
0301: SSATESDQDY GPASRFQGSY HEDIRTCDGC GSVMPLKSLK RTKDSQPEEL LCKHCSKLRK SNQYCGICKR IWHPSDDGDW VCCDGCDVWV HAECDNITNE
0401: RFKELEHNNY YCPDCKVQHE LTPTILEEQN SVFKSTEKTT ETGLPDAITV VCNGMEGTYI RKFHAIECKC GSCGSRKQSP SEWERHTGCR AKKWKYSVRV
0501: KDTMLPLEKW IAEFSTYTLE TQMLDKQKML SLLEEKYEPV RAKWTTERCA VCRWVEDWEE NKMIICNRCQ VAVHQECYGV SKSQDLTSWV CRACETPDIE
0601: RDCCLCPVKG GALKPSDVEG LWVHVTCAWF RPEVGFLNHE NMEPAVGLFK IPANSFLKVC TICKQTHGSC VHCCKCATHF HAMCASRAGY NMELHCLEKN
0701: GVQRTRKSVY CSFHRKPDPD SVVVVHTPSG VFGSRNLLQN QYGRAKGSRL VLTKKMKLPG FQTQTQAEQS RVFDSLSAAR CRIYSRSNTK IDLEAISHRL
0801: KGPSHHSLSA IENLNSFKAS FSFRAPFMSV FCFLGATFSE YLRKILISIY LVTHQEADFT SFRERLKHLQ RTENFRVCFG KSGIHGWGLF ARKSIQEGEM
0901: IIEYRGVKVR RSVADLREAN YRSQGKDCYL FKISEEIVID ATDSGNIARL INHSCMPNCY ARIVSMGDGE DNRIVLIAKT NVAAGEELTY DYLFEVDESE
1001: EIKVPCLCKA PNCRKFMN
Arabidopsis Description
ATX3Histone-lysine N-methyltransferase ATX3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M364]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.