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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • vacuole 3
  • mitochondrion 2
  • plasma membrane 6
  • extracellular 2
  • endoplasmic reticulum 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
plasma membrane: 18260611
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G082600.1 Wheat plasma membrane 80.17 78.85
TraesCS6B01G128000.1 Wheat plasma membrane 79.33 78.02
TraesCS6A01G099800.1 Wheat plasma membrane 78.21 77.56
Zm00001d029497_P001 Maize mitochondrion, plasma membrane 77.65 76.8
KXG39153 Sorghum plasma membrane 75.98 75.98
GSMUA_Achr8P26320_001 Banana plasma membrane 61.45 62.86
VIT_06s0004g05070.t01 Wine grape plasma membrane 54.19 59.33
KRH23102 Soybean plasma membrane 55.31 56.57
KRH10230 Soybean plasma membrane 54.47 56.52
KRH10232 Soybean plasma membrane 53.91 56.43
PGSC0003DMT400005506 Potato plasma membrane 50.0 53.59
Solyc06g005620.2.1 Tomato plasma membrane 50.0 53.12
Os01t0972200-00 Rice plasma membrane 51.12 51.99
AT5G59520.1 Thale cress plasma membrane 47.21 47.88
KRH23101 Soybean plasma membrane 26.54 47.5
CDY53449 Canola plasma membrane 47.21 47.47
Bra020314.1-P Field mustard plasma membrane 47.21 47.47
CDY48680 Canola plasma membrane 46.65 46.91
HORVU6Hr1G018070.11 Barley vacuole 43.02 43.02
HORVU5Hr1G071590.3 Barley plasma membrane 41.34 41.11
Protein Annotations
MapMan:24.2.11.1EntrezGene:4333098ProteinID:AAO37513.1ProteinID:ABF96572.1EMBL:AY302059ProteinID:BAF12265.1
ProteinID:BAS84667.1GO:GO:0003674GO:GO:0005215GO:GO:0005385GO:GO:0005575GO:GO:0005623
GO:GO:0005886GO:GO:0006810GO:GO:0006811GO:GO:0006829GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0030001GO:GO:0046873GO:GO:0055085GO:GO:0071577EnsemblPlantsGene:Os03g0411800
EnsemblPlants:Os03t0411800-01PFAM:PF02535PANTHER:PTHR11040PANTHER:PTHR11040:SF23UniProt:Q852F6SignalP:SignalP-TM
TMHMM:TMhelixUniParc:UPI0000002745RefSeq:XP_015628224.1InterPro:ZIPSEG:seg:
Description
ZINC TRANSPORTER 2Similar to Metal transport protein. (Os03t0411800-01)
Coordinates
chr3:-:17008027..17011263
Molecular Weight (calculated)
36647.4 Da
IEP (calculated)
6.073
GRAVY (calculated)
0.632
Length
358 amino acids
Sequence
(BLAST)
001: MAGGRGARAS LHLHLAWLCA FATTAWAHGG GGGGGDSDAD ADGGGEGKPD LRARGLVAAK LWCLAVVFAG TLAGGVSPYF MRWNDAFLAL GTQFAGGVFL
101: GTAMMHFLAD ANETFADLLP GTAYPFAFML ACAGYVLTML ADCAISFVVA RGGGRTEPAA AAGAGLEEGK LSSTNGNASD PPAADAAAQD HSVASMLRNA
201: STLGDSVLLI AALCFHSVFE GIAIGVAETK ADAWKALWTI SLHKIFAAIA MGIALLRMLP DRPFLSCFGY AFAFAVSSPV GVGIGIVIDA TTQGRVADWI
301: FAVSMGLATG IFIYVSINHL LSKGYTPLRP VAADTPAGRL LAVVLGVAVI AVVMIWDT
Best Arabidopsis Sequence Match ( AT1G55910.1 )
(BLAST)
001: MSRSLVFFFL FLVLVVPCLS HGTGGDHDDD EASHVKSSDL KSKSLISVKI ACLVIIFVLT FISGVSPYFL KWSQGFLVLG TQFAGGVFLA TALMHFLSDA
101: DETFRGLLTA EGESEPSPAY PFAYMLACAG FMLTMLADSV IAHIYSKTQN DLELQGEDKS NQRSATTETS IGDSILLIVA LCFHSVFEGI AIGISETKSD
201: AWRALWTITL HKIFAAIAMG IALLRMIPDR PLFSSITYSF AFAISSPIGV AIGIVIDATT QGSIADWIFA LSMSLACGVF VYVSVNHLLA KGYRPNKKVH
301: VDEPRYKFLA VLFGVVVIAI VMIWDT
Arabidopsis Description
ZIP11Zinc transporter 11 [Source:UniProtKB/Swiss-Prot;Acc:Q94EG9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.